Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3873

Experiment: KB with Levodopa 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3872 and Psyr_3873 overlap by 4 nucleotidesPsyr_3873 and Psyr_3874 are separated by 343 nucleotides Psyr_3872: Psyr_3872 - conserved hypothetical protein, at 4,612,321 to 4,613,367 _3872 Psyr_3873: Psyr_3873 - ATP-dependent DNA ligase:ATP-dependent DNA ligase, at 4,613,364 to 4,615,067 _3873 Psyr_3874: Psyr_3874 - amino acid ABC transporter substrate-binding protein, PAAT family, at 4,615,411 to 4,616,193 _3874 Position (kb) 4613 4614 4615 4616Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4612.375 kb on + strandat 4612.375 kb on + strandat 4612.375 kb on + strandat 4612.375 kb on + strandat 4612.376 kb on - strandat 4612.376 kb on - strandat 4612.376 kb on - strandat 4612.456 kb on + strand, within Psyr_3872at 4612.456 kb on + strand, within Psyr_3872at 4612.456 kb on + strand, within Psyr_3872at 4612.482 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.589 kb on + strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.590 kb on - strand, within Psyr_3872at 4612.651 kb on + strand, within Psyr_3872at 4612.741 kb on + strand, within Psyr_3872at 4612.742 kb on - strand, within Psyr_3872at 4612.835 kb on - strand, within Psyr_3872at 4612.931 kb on - strand, within Psyr_3872at 4612.931 kb on - strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.948 kb on + strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4612.949 kb on - strand, within Psyr_3872at 4613.069 kb on - strand, within Psyr_3872at 4613.385 kb on + strandat 4613.386 kb on - strandat 4613.442 kb on + strandat 4613.442 kb on + strandat 4613.443 kb on - strandat 4613.484 kb on + strandat 4613.484 kb on + strandat 4613.485 kb on - strandat 4613.485 kb on - strandat 4613.485 kb on - strandat 4613.531 kb on - strandat 4613.589 kb on + strand, within Psyr_3873at 4613.590 kb on - strand, within Psyr_3873at 4613.590 kb on - strand, within Psyr_3873at 4613.590 kb on - strand, within Psyr_3873at 4613.629 kb on + strand, within Psyr_3873at 4613.651 kb on + strand, within Psyr_3873at 4613.652 kb on - strand, within Psyr_3873at 4613.652 kb on - strand, within Psyr_3873at 4613.905 kb on + strand, within Psyr_3873at 4613.906 kb on - strand, within Psyr_3873at 4613.931 kb on + strand, within Psyr_3873at 4613.932 kb on - strand, within Psyr_3873at 4614.406 kb on - strand, within Psyr_3873at 4614.406 kb on - strandat 4614.406 kb on - strand, within Psyr_3873at 4614.621 kb on + strand, within Psyr_3873at 4614.622 kb on - strand, within Psyr_3873at 4614.747 kb on + strand, within Psyr_3873at 4614.817 kb on - strand, within Psyr_3873at 4615.065 kb on + strandat 4615.066 kb on - strandat 4615.066 kb on - strandat 4615.066 kb on - strandat 4615.092 kb on + strandat 4615.092 kb on + strandat 4615.092 kb on + strandat 4615.092 kb on + strandat 4615.205 kb on - strandat 4615.265 kb on + strandat 4615.265 kb on + strandat 4615.265 kb on + strandat 4615.266 kb on - strandat 4615.268 kb on - strandat 4615.268 kb on - strandat 4615.268 kb on - strandat 4615.275 kb on - strandat 4615.288 kb on + strandat 4615.289 kb on - strandat 4615.341 kb on + strandat 4615.341 kb on + strandat 4615.341 kb on + strandat 4615.342 kb on - strandat 4615.358 kb on + strandat 4615.390 kb on + strandat 4615.391 kb on - strandat 4615.399 kb on - strandat 4615.483 kb on + strandat 4615.483 kb on + strandat 4615.484 kb on - strandat 4615.484 kb on - strandat 4615.516 kb on + strand, within Psyr_3874at 4615.516 kb on + strand, within Psyr_3874at 4615.516 kb on + strand, within Psyr_3874at 4615.517 kb on - strand, within Psyr_3874at 4615.517 kb on - strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.783 kb on - strand, within Psyr_3874at 4615.822 kb on + strand, within Psyr_3874at 4615.823 kb on - strand, within Psyr_3874at 4615.849 kb on + strand, within Psyr_3874at 4615.850 kb on - strand, within Psyr_3874at 4615.894 kb on + strand, within Psyr_3874at 4615.915 kb on + strand, within Psyr_3874at 4615.915 kb on + strand, within Psyr_3874at 4616.009 kb on - strand, within Psyr_3874

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM
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4,612,375 + +1.3
4,612,375 + -0.7
4,612,375 + +0.1
4,612,375 + -1.1
4,612,376 - +1.0
4,612,376 - -0.9
4,612,376 - -0.5
4,612,456 + Psyr_3872 0.13 -0.6
4,612,456 + Psyr_3872 0.13 +0.1
4,612,456 + Psyr_3872 0.13 +0.5
4,612,482 + Psyr_3872 0.15 -0.8
4,612,589 + Psyr_3872 0.26 +0.7
4,612,589 + Psyr_3872 0.26 +1.6
4,612,589 + Psyr_3872 0.26 -0.6
4,612,589 + Psyr_3872 0.26 +0.4
4,612,589 + Psyr_3872 0.26 -0.7
4,612,589 + Psyr_3872 0.26 -0.5
4,612,589 + Psyr_3872 0.26 +3.1
4,612,590 - Psyr_3872 0.26 -0.4
4,612,590 - Psyr_3872 0.26 +1.3
4,612,590 - Psyr_3872 0.26 -0.4
4,612,590 - Psyr_3872 0.26 -2.1
4,612,590 - Psyr_3872 0.26 +1.2
4,612,590 - Psyr_3872 0.26 +4.4
4,612,590 - Psyr_3872 0.26 -1.5
4,612,651 + Psyr_3872 0.32 +0.0
4,612,741 + Psyr_3872 0.40 +0.1
4,612,742 - Psyr_3872 0.40 -0.5
4,612,835 - Psyr_3872 0.49 -0.6
4,612,931 - Psyr_3872 0.58 +0.9
4,612,931 - Psyr_3872 0.58 -0.8
4,612,948 + Psyr_3872 0.60 +0.1
4,612,948 + Psyr_3872 0.60 -0.3
4,612,948 + Psyr_3872 0.60 +0.6
4,612,948 + Psyr_3872 0.60 -0.6
4,612,948 + Psyr_3872 0.60 -1.3
4,612,948 + Psyr_3872 0.60 -1.4
4,612,948 + Psyr_3872 0.60 +0.0
4,612,948 + Psyr_3872 0.60 +0.7
4,612,948 + Psyr_3872 0.60 +0.1
4,612,948 + Psyr_3872 0.60 -2.0
4,612,949 - Psyr_3872 0.60 -1.4
4,612,949 - Psyr_3872 0.60 -0.2
4,612,949 - Psyr_3872 0.60 +0.7
4,612,949 - Psyr_3872 0.60 +0.7
4,612,949 - Psyr_3872 0.60 +0.5
4,612,949 - Psyr_3872 0.60 -3.0
4,612,949 - Psyr_3872 0.60 +1.1
4,612,949 - Psyr_3872 0.60 +1.2
4,613,069 - Psyr_3872 0.71 +0.6
4,613,385 + -0.3
4,613,386 - -0.3
4,613,442 + -1.7
4,613,442 + +1.9
4,613,443 - +1.1
4,613,484 + -0.4
4,613,484 + -0.3
4,613,485 - -0.9
4,613,485 - -1.4
4,613,485 - +0.1
4,613,531 - -0.9
4,613,589 + Psyr_3873 0.13 -0.3
4,613,590 - Psyr_3873 0.13 -0.1
4,613,590 - Psyr_3873 0.13 +0.1
4,613,590 - Psyr_3873 0.13 -1.1
4,613,629 + Psyr_3873 0.16 -0.4
4,613,651 + Psyr_3873 0.17 -2.4
4,613,652 - Psyr_3873 0.17 -0.1
4,613,652 - Psyr_3873 0.17 +1.8
4,613,905 + Psyr_3873 0.32 -2.7
4,613,906 - Psyr_3873 0.32 -1.5
4,613,931 + Psyr_3873 0.33 +2.1
4,613,932 - Psyr_3873 0.33 -0.7
4,614,406 - Psyr_3873 0.61 -1.2
4,614,406 - +0.8
4,614,406 - Psyr_3873 0.61 -0.7
4,614,621 + Psyr_3873 0.74 -1.0
4,614,622 - Psyr_3873 0.74 +1.9
4,614,747 + Psyr_3873 0.81 +0.9
4,614,817 - Psyr_3873 0.85 -0.2
4,615,065 + +0.2
4,615,066 - +0.7
4,615,066 - +0.3
4,615,066 - +0.3
4,615,092 + -0.7
4,615,092 + -2.9
4,615,092 + -0.1
4,615,092 + +0.4
4,615,205 - +0.2
4,615,265 + -0.4
4,615,265 + +0.4
4,615,265 + +0.6
4,615,266 - +0.3
4,615,268 - +1.1
4,615,268 - -1.4
4,615,268 - +0.8
4,615,275 - +0.3
4,615,288 + -0.5
4,615,289 - +0.3
4,615,341 + +0.5
4,615,341 + +0.5
4,615,341 + -0.6
4,615,342 - +0.5
4,615,358 + +2.1
4,615,390 + +2.8
4,615,391 - -0.1
4,615,399 - +0.2
4,615,483 + +0.6
4,615,483 + -0.5
4,615,484 - -1.7
4,615,484 - +0.6
4,615,516 + Psyr_3874 0.13 -1.3
4,615,516 + Psyr_3874 0.13 +1.6
4,615,516 + Psyr_3874 0.13 +2.5
4,615,517 - Psyr_3874 0.14 -3.4
4,615,517 - Psyr_3874 0.14 -0.9
4,615,720 + Psyr_3874 0.39 -0.1
4,615,720 + Psyr_3874 0.39 -2.9
4,615,720 + Psyr_3874 0.39 -0.3
4,615,720 + Psyr_3874 0.39 +0.6
4,615,721 - Psyr_3874 0.40 +0.6
4,615,721 - Psyr_3874 0.40 -1.9
4,615,721 - Psyr_3874 0.40 +0.8
4,615,721 - Psyr_3874 0.40 -1.9
4,615,721 - Psyr_3874 0.40 +1.7
4,615,721 - Psyr_3874 0.40 -0.3
4,615,721 - Psyr_3874 0.40 -0.1
4,615,721 - Psyr_3874 0.40 -1.4
4,615,783 - Psyr_3874 0.48 +0.5
4,615,822 + Psyr_3874 0.52 -0.0
4,615,823 - Psyr_3874 0.53 -0.1
4,615,849 + Psyr_3874 0.56 -1.0
4,615,850 - Psyr_3874 0.56 -0.9
4,615,894 + Psyr_3874 0.62 +0.5
4,615,915 + Psyr_3874 0.64 -1.2
4,615,915 + Psyr_3874 0.64 +0.5
4,616,009 - Psyr_3874 0.76 -0.1

Or see this region's nucleotide sequence