Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2794

Experiment: KB with Levodopa 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Levodopa 10 mM
3,376,459	+		Psyr_2793	0.33	-0.5
3,376,460	-		Psyr_2793	0.33	+0.2
3,376,527	-		Psyr_2793	0.38	-1.9
3,376,527	-		Psyr_2793	0.38	+0.1
3,376,530	+		Psyr_2793	0.38	-1.5
3,376,531	-		Psyr_2793	0.38	+0.1
3,376,672	-		Psyr_2793	0.48	-0.3
3,376,741	+		Psyr_2793	0.53	-0.4
3,376,741	+		Psyr_2793	0.53	-1.0
3,376,741	+		Psyr_2793	0.53	-0.0
3,376,742	-		Psyr_2793	0.53	+0.4
3,376,742	-		Psyr_2793	0.53	-0.7
3,376,767	+		Psyr_2793	0.55	+0.5
3,376,767	+		Psyr_2793	0.55	-0.1
3,376,767	+		Psyr_2793	0.55	-0.7
3,376,767	+		Psyr_2793	0.55	+1.1
3,376,767	+		Psyr_2793	0.55	-1.3
3,376,767	+		Psyr_2793	0.55	-0.5
3,376,768	-		Psyr_2793	0.55	-2.2
3,376,768	-		Psyr_2793	0.55	-0.8
3,376,768	-		Psyr_2793	0.55	-2.6
3,376,768	-		Psyr_2793	0.55	-0.7
3,376,768	-		Psyr_2793	0.55	-0.3
3,376,811	-		Psyr_2793	0.58	-1.7
3,376,833	+		Psyr_2793	0.59	+0.4
3,376,833	+		Psyr_2793	0.59	-1.1
3,376,833	+		Psyr_2793	0.59	+1.9
3,376,833	+		Psyr_2793	0.59	-3.2
3,376,833	+		Psyr_2793	0.59	+0.1
3,376,833	+		Psyr_2793	0.59	+1.9
3,376,834	-		Psyr_2793	0.59	-2.0
3,376,834	-		Psyr_2793	0.59	+0.8
3,376,834	-		Psyr_2793	0.59	+0.1
3,376,992	+		Psyr_2793	0.70	-0.1
3,376,992	+		Psyr_2793	0.70	-0.5
3,376,992	+		Psyr_2793	0.70	+0.8
3,376,992	+		Psyr_2793	0.70	+2.0
3,376,993	-		Psyr_2793	0.70	+1.5
3,376,993	-		Psyr_2793	0.70	+0.3
3,377,103	+		Psyr_2793	0.78	+0.2
3,377,103	+		Psyr_2793	0.78	-0.2
3,377,103	+		Psyr_2793	0.78	-0.1
3,377,103	+		Psyr_2793	0.78	+1.4
3,377,103	+		Psyr_2793	0.78	-1.4
3,377,103	+		Psyr_2793	0.78	+0.0
3,377,104	-		Psyr_2793	0.78	-0.0
3,377,104	-		Psyr_2793	0.78	+0.8
3,377,301	+				+1.6
3,377,301	+				-1.0
3,377,301	+				+1.3
3,377,301	+				+0.5
3,377,301	+				+0.2
3,377,301	+				+0.3
3,377,301	+				-0.1
3,377,302	-				+1.1
3,377,302	-				+0.3
3,377,302	-				-0.3
3,377,302	-				+0.4
3,377,302	-				-0.1
3,377,379	+				+1.1
3,377,380	-				+0.3
3,377,432	-				-0.6
3,377,449	+				-0.5
3,377,450	-				-0.7
3,377,450	-				-2.5
3,377,567	+		Psyr_2794	0.12	+1.3
3,377,567	+		Psyr_2794	0.12	-0.5
3,377,567	+		Psyr_2794	0.12	+0.4
3,377,567	+		Psyr_2794	0.12	+0.8
3,377,567	+		Psyr_2794	0.12	+1.0
3,377,568	-		Psyr_2794	0.12	-0.7
3,377,568	-		Psyr_2794	0.12	+0.3
3,377,568	-		Psyr_2794	0.12	-0.2
3,377,568	-		Psyr_2794	0.12	-0.3
3,377,742	+		Psyr_2794	0.25	-0.3
3,377,743	-		Psyr_2794	0.26	+1.0
3,377,743	-		Psyr_2794	0.26	+1.9
3,377,795	+		Psyr_2794	0.30	-1.0
3,377,795	+		Psyr_2794	0.30	+0.8
3,377,795	+		Psyr_2794	0.30	-1.2
3,377,795	+		Psyr_2794	0.30	+1.8
3,377,795	+		Psyr_2794	0.30	+0.8
3,377,795	+				+1.3
3,377,796	-		Psyr_2794	0.30	+2.3
3,377,796	-		Psyr_2794	0.30	+1.3
3,377,799	+		Psyr_2794	0.30	-0.0
3,378,012	-		Psyr_2794	0.46	-0.2
3,378,020	+		Psyr_2794	0.47	+1.3
3,378,020	+		Psyr_2794	0.47	-0.5
3,378,063	-		Psyr_2794	0.50	-0.3
3,378,086	+		Psyr_2794	0.52	+1.9
3,378,110	+		Psyr_2794	0.54	-0.6
3,378,110	+		Psyr_2794	0.54	-3.1
3,378,111	-		Psyr_2794	0.54	-0.0
3,378,111	-		Psyr_2794	0.54	+0.2
3,378,164	+		Psyr_2794	0.58	-0.2
3,378,164	+		Psyr_2794	0.58	+2.1
3,378,164	+		Psyr_2794	0.58	-0.4
3,378,165	-		Psyr_2794	0.58	+0.6
3,378,165	-		Psyr_2794	0.58	+0.1
3,378,165	-		Psyr_2794	0.58	+0.3
3,378,165	-		Psyr_2794	0.58	+0.5
3,378,281	+		Psyr_2794	0.67	+1.0
3,378,429	-		Psyr_2794	0.78	+0.1
3,378,443	+		Psyr_2794	0.79	+2.0
3,378,443	+		Psyr_2794	0.79	+0.5
3,378,443	+		Psyr_2794	0.79	+1.0
3,378,443	+		Psyr_2794	0.79	-0.7
3,378,444	-		Psyr_2794	0.79	-1.3
3,378,444	-		Psyr_2794	0.79	+0.5
3,378,444	-		Psyr_2794	0.79	-0.2
3,378,444	-		Psyr_2794	0.79	+1.1
3,378,497	+		Psyr_2794	0.83	+1.3
3,378,498	-		Psyr_2794	0.84	-0.6
3,378,498	-		Psyr_2794	0.84	-0.7
3,378,546	-		Psyr_2794	0.87	+1.0
3,378,560	+		Psyr_2794	0.88	+0.8
3,378,561	-		Psyr_2794	0.88	-0.4
3,378,700	-				+0.4
3,378,731	+				+0.9
3,378,732	-				-1.6
3,378,732	-				+0.2
3,378,801	+		Psyr_2795	0.22	-1.5
3,378,801	+		Psyr_2795	0.22	-1.0
3,378,801	+		Psyr_2795	0.22	+0.8
3,378,801	+		Psyr_2795	0.22	+1.1
3,378,801	+		Psyr_2795	0.22	-0.0
3,378,801	+		Psyr_2795	0.22	+0.5
3,378,801	+		Psyr_2795	0.22	-0.8
3,378,801	+		Psyr_2795	0.22	+1.4
3,378,801	+		Psyr_2795	0.22	+0.3
3,378,802	-		Psyr_2795	0.23	-0.9
3,378,802	-		Psyr_2795	0.23	+0.1
3,378,802	-		Psyr_2795	0.23	-1.1
3,378,802	-		Psyr_2795	0.23	+1.3
3,378,802	-		Psyr_2795	0.23	+2.1
3,378,802	-		Psyr_2795	0.23	-0.7
3,378,802	-		Psyr_2795	0.23	+1.1
3,378,802	-		Psyr_2795	0.23	-0.6
3,378,802	-		Psyr_2795	0.23	+0.2
3,378,802	-		Psyr_2795	0.23	-0.1
3,378,802	-		Psyr_2795	0.23	-1.0
3,378,802	-		Psyr_2795	0.23	+2.3
3,378,802	-		Psyr_2795	0.23	+2.9
3,378,805	+		Psyr_2795	0.23	-1.2
3,379,159	+				-1.0
3,379,159	+				-0.8
3,379,160	-				+2.1
3,379,160	-				+0.6
3,379,175	+				-1.2
3,379,230	+				+0.8
3,379,231	-				+3.9
3,379,231	-				-0.2
3,379,231	-				-0.4
3,379,231	-				-1.7
3,379,232	+				+0.0
3,379,232	+				+1.3
3,379,241	+				+0.6
3,379,242	-				+0.1
3,379,242	-				-1.5
3,379,242	-				+0.7
3,379,474	+		Psyr_2796	0.45	-0.3
3,379,498	+		Psyr_2796	0.49	-1.3
3,379,498	+		Psyr_2796	0.49	-1.0
3,379,498	+		Psyr_2796	0.49	+0.4
3,379,498	+		Psyr_2796	0.49	-0.2
3,379,498	+		Psyr_2796	0.49	-0.1
3,379,498	+		Psyr_2796	0.49	-1.4
3,379,499	-		Psyr_2796	0.49	+0.3
3,379,499	-		Psyr_2796	0.49	-0.5
3,379,499	-		Psyr_2796	0.49	+1.3
3,379,499	-		Psyr_2796	0.49	+0.9
3,379,499	-		Psyr_2796	0.49	+0.5
3,379,506	+		Psyr_2796	0.50	-0.1
3,379,507	-		Psyr_2796	0.51	+0.7
3,379,507	-		Psyr_2796	0.51	+0.4