Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2776 and Psyr_2777 are separated by 29 nucleotides Psyr_2777 and Psyr_2778 are separated by 2 nucleotides Psyr_2778 and Psyr_2779 are separated by 9 nucleotides Psyr_2779 and Psyr_2780 are separated by 2 nucleotides
Psyr_2776: Psyr_2776 - hypothetical protein, at 3,362,430 to 3,363,095
_2776
Psyr_2777: Psyr_2777 - NLP/P60, at 3,363,125 to 3,363,889
_2777
Psyr_2778: Psyr_2778 - Phage minor tail protein L, at 3,363,892 to 3,364,641
_2778
Psyr_2779: Psyr_2779 - Phage minor tail, at 3,364,651 to 3,364,989
_2779
Psyr_2780: Psyr_2780 - Phage tail tape measure protein lambda, at 3,364,992 to 3,368,477
_2780
Position (kb)
3363
3364
3365 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3362.922 kb on + strand, within Psyr_2776 at 3362.922 kb on + strand, within Psyr_2776 at 3362.922 kb on + strand, within Psyr_2776 at 3362.923 kb on - strand, within Psyr_2776 at 3362.923 kb on - strand, within Psyr_2776 at 3362.923 kb on - strand, within Psyr_2776 at 3362.923 kb on - strand, within Psyr_2776 at 3362.943 kb on + strand at 3362.944 kb on - strand, within Psyr_2776 at 3363.093 kb on + strand at 3363.094 kb on - strand at 3363.094 kb on - strand at 3363.138 kb on + strand at 3363.201 kb on - strand at 3363.201 kb on - strand at 3363.219 kb on + strand, within Psyr_2777 at 3363.255 kb on - strand, within Psyr_2777 at 3363.297 kb on + strand, within Psyr_2777 at 3363.297 kb on + strand, within Psyr_2777 at 3363.297 kb on + strand, within Psyr_2777 at 3363.297 kb on + strand, within Psyr_2777 at 3363.298 kb on - strand, within Psyr_2777 at 3363.298 kb on - strand, within Psyr_2777 at 3363.298 kb on - strand, within Psyr_2777 at 3363.396 kb on + strand, within Psyr_2777 at 3363.396 kb on + strand, within Psyr_2777 at 3363.408 kb on + strand, within Psyr_2777 at 3363.408 kb on + strand, within Psyr_2777 at 3363.409 kb on - strand, within Psyr_2777 at 3363.449 kb on - strand, within Psyr_2777 at 3363.449 kb on - strand, within Psyr_2777 at 3363.449 kb on - strand, within Psyr_2777 at 3363.489 kb on + strand, within Psyr_2777 at 3363.489 kb on + strand, within Psyr_2777 at 3363.489 kb on + strand, within Psyr_2777 at 3363.489 kb on + strand, within Psyr_2777 at 3363.557 kb on - strand, within Psyr_2777 at 3363.557 kb on - strand, within Psyr_2777 at 3363.789 kb on + strand, within Psyr_2777 at 3363.789 kb on + strand, within Psyr_2777 at 3363.789 kb on + strand, within Psyr_2777 at 3363.879 kb on + strand at 3363.879 kb on + strand at 3363.880 kb on - strand at 3363.937 kb on + strand at 3363.937 kb on + strand at 3363.938 kb on - strand at 3363.938 kb on - strand at 3364.041 kb on - strand, within Psyr_2778 at 3364.203 kb on - strand, within Psyr_2778 at 3364.228 kb on - strand, within Psyr_2778 at 3364.275 kb on - strand, within Psyr_2778 at 3364.275 kb on - strand, within Psyr_2778 at 3364.288 kb on - strand, within Psyr_2778 at 3364.299 kb on + strand, within Psyr_2778 at 3364.443 kb on - strand, within Psyr_2778 at 3364.693 kb on + strand, within Psyr_2779 at 3364.693 kb on + strand, within Psyr_2779 at 3364.825 kb on - strand, within Psyr_2779 at 3364.899 kb on - strand, within Psyr_2779 at 3364.899 kb on - strand, within Psyr_2779 at 3364.962 kb on + strand at 3364.971 kb on + strand at 3364.989 kb on + strand at 3364.993 kb on + strand at 3364.993 kb on + strand at 3364.993 kb on + strand at 3364.993 kb on + strand at 3364.993 kb on + strand at 3364.993 kb on + strand at 3364.993 kb on + strand at 3364.994 kb on - strand at 3364.994 kb on - strand at 3364.994 kb on - strand at 3365.173 kb on + strand at 3365.174 kb on - strand at 3365.174 kb on - strand at 3365.189 kb on + strand at 3365.437 kb on + strand, within Psyr_2780 at 3365.471 kb on + strand, within Psyr_2780 at 3365.471 kb on + strand, within Psyr_2780 at 3365.472 kb on - strand, within Psyr_2780 at 3365.521 kb on + strand, within Psyr_2780 at 3365.522 kb on - strand, within Psyr_2780 at 3365.522 kb on - strand, within Psyr_2780 at 3365.538 kb on + strand, within Psyr_2780 at 3365.539 kb on - strand, within Psyr_2780
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 3,362,922 + Psyr_2776 0.74 -0.5 3,362,922 + Psyr_2776 0.74 +0.2 3,362,922 + Psyr_2776 0.74 +0.3 3,362,923 - Psyr_2776 0.74 -0.7 3,362,923 - Psyr_2776 0.74 -1.5 3,362,923 - Psyr_2776 0.74 +0.1 3,362,923 - Psyr_2776 0.74 -0.5 3,362,943 + -0.7 3,362,944 - Psyr_2776 0.77 +0.0 3,363,093 + -0.1 3,363,094 - +0.5 3,363,094 - -1.3 3,363,138 + -0.9 3,363,201 - -0.2 3,363,201 - -1.4 3,363,219 + Psyr_2777 0.12 -0.3 3,363,255 - Psyr_2777 0.17 -1.2 3,363,297 + Psyr_2777 0.22 -0.2 3,363,297 + Psyr_2777 0.22 +1.7 3,363,297 + Psyr_2777 0.22 +0.3 3,363,297 + Psyr_2777 0.22 -0.3 3,363,298 - Psyr_2777 0.23 +1.3 3,363,298 - Psyr_2777 0.23 -0.7 3,363,298 - Psyr_2777 0.23 -0.4 3,363,396 + Psyr_2777 0.35 -0.4 3,363,396 + Psyr_2777 0.35 +0.3 3,363,408 + Psyr_2777 0.37 -0.0 3,363,408 + Psyr_2777 0.37 +3.1 3,363,409 - Psyr_2777 0.37 -0.5 3,363,449 - Psyr_2777 0.42 -2.8 3,363,449 - Psyr_2777 0.42 +0.3 3,363,449 - Psyr_2777 0.42 -0.3 3,363,489 + Psyr_2777 0.48 -0.5 3,363,489 + Psyr_2777 0.48 -0.5 3,363,489 + Psyr_2777 0.48 -0.7 3,363,489 + Psyr_2777 0.48 -1.8 3,363,557 - Psyr_2777 0.56 -1.0 3,363,557 - Psyr_2777 0.56 -0.5 3,363,789 + Psyr_2777 0.87 -1.0 3,363,789 + Psyr_2777 0.87 +0.8 3,363,789 + Psyr_2777 0.87 -0.3 3,363,879 + -0.3 3,363,879 + -0.9 3,363,880 - +1.3 3,363,937 + -0.3 3,363,937 + +0.1 3,363,938 - -1.9 3,363,938 - +1.1 3,364,041 - Psyr_2778 0.20 +0.1 3,364,203 - Psyr_2778 0.41 +0.3 3,364,228 - Psyr_2778 0.45 +0.3 3,364,275 - Psyr_2778 0.51 -0.6 3,364,275 - Psyr_2778 0.51 -2.2 3,364,288 - Psyr_2778 0.53 -0.9 3,364,299 + Psyr_2778 0.54 -1.3 3,364,443 - Psyr_2778 0.73 -0.0 3,364,693 + Psyr_2779 0.12 -0.9 3,364,693 + Psyr_2779 0.12 +0.1 3,364,825 - Psyr_2779 0.51 -1.5 3,364,899 - Psyr_2779 0.73 -0.0 3,364,899 - Psyr_2779 0.73 -1.3 3,364,962 + +1.2 3,364,971 + -2.4 3,364,989 + +0.2 3,364,993 + -0.7 3,364,993 + +1.1 3,364,993 + +1.1 3,364,993 + -0.8 3,364,993 + +0.3 3,364,993 + +0.1 3,364,993 + +1.3 3,364,994 - +0.3 3,364,994 - -0.9 3,364,994 - +0.4 3,365,173 + -0.5 3,365,174 - +1.3 3,365,174 - -0.1 3,365,189 + +1.5 3,365,437 + Psyr_2780 0.13 -0.1 3,365,471 + Psyr_2780 0.14 -1.2 3,365,471 + Psyr_2780 0.14 -0.8 3,365,472 - Psyr_2780 0.14 +0.2 3,365,521 + Psyr_2780 0.15 +0.5 3,365,522 - Psyr_2780 0.15 -0.7 3,365,522 - Psyr_2780 0.15 +2.1 3,365,538 + Psyr_2780 0.16 -0.7 3,365,539 - Psyr_2780 0.16 +0.1
Or see this region's nucleotide sequence