Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2566

Experiment: KB with Levodopa 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2564 and Psyr_2565 are separated by 111 nucleotidesPsyr_2565 and Psyr_2566 are separated by 3 nucleotidesPsyr_2566 and Psyr_2567 are separated by 40 nucleotides Psyr_2564: Psyr_2564 - transcriptional regulator, GntR family, at 2,978,136 to 2,978,876 _2564 Psyr_2565: Psyr_2565 - dihydroxyacetone kinase DhaL subunit, at 2,978,988 to 2,979,650 _2565 Psyr_2566: Psyr_2566 - dihydroxyacetone kinase DhaK subunit, at 2,979,654 to 2,980,655 _2566 Psyr_2567: Psyr_2567 - Zinc-containing alcohol dehydrogenase superfamily, at 2,980,696 to 2,981,811 _2567 Position (kb) 2979 2980 2981Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2978.686 kb on - strand, within Psyr_2564at 2978.703 kb on - strand, within Psyr_2564at 2978.764 kb on + strand, within Psyr_2564at 2978.765 kb on - strand, within Psyr_2564at 2978.765 kb on - strand, within Psyr_2564at 2978.891 kb on - strandat 2978.892 kb on + strandat 2978.893 kb on - strandat 2978.990 kb on - strandat 2979.108 kb on + strand, within Psyr_2565at 2979.479 kb on + strand, within Psyr_2565at 2979.770 kb on - strand, within Psyr_2566at 2979.770 kb on - strand, within Psyr_2566at 2979.770 kb on - strand, within Psyr_2566at 2979.770 kb on - strand, within Psyr_2566at 2979.770 kb on - strand, within Psyr_2566at 2979.781 kb on + strand, within Psyr_2566at 2979.781 kb on + strand, within Psyr_2566at 2979.782 kb on - strand, within Psyr_2566at 2979.891 kb on + strand, within Psyr_2566at 2980.563 kb on - strandat 2980.682 kb on - strandat 2980.726 kb on - strandat 2980.848 kb on - strand, within Psyr_2567at 2980.848 kb on - strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.011 kb on + strand, within Psyr_2567at 2981.012 kb on - strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.015 kb on + strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.016 kb on - strand, within Psyr_2567at 2981.358 kb on - strand, within Psyr_2567at 2981.358 kb on - strand, within Psyr_2567at 2981.397 kb on - strand, within Psyr_2567at 2981.624 kb on + strand, within Psyr_2567at 2981.625 kb on - strand, within Psyr_2567

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM
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2,978,686 - Psyr_2564 0.74 -0.7
2,978,703 - Psyr_2564 0.77 +0.4
2,978,764 + Psyr_2564 0.85 +1.3
2,978,765 - Psyr_2564 0.85 +0.5
2,978,765 - Psyr_2564 0.85 +0.2
2,978,891 - -1.3
2,978,892 + -0.8
2,978,893 - -0.0
2,978,990 - -0.2
2,979,108 + Psyr_2565 0.18 -2.2
2,979,479 + Psyr_2565 0.74 -1.2
2,979,770 - Psyr_2566 0.12 -0.4
2,979,770 - Psyr_2566 0.12 -0.9
2,979,770 - Psyr_2566 0.12 -1.8
2,979,770 - Psyr_2566 0.12 -0.8
2,979,770 - Psyr_2566 0.12 +0.7
2,979,781 + Psyr_2566 0.13 -0.7
2,979,781 + Psyr_2566 0.13 +0.7
2,979,782 - Psyr_2566 0.13 -0.7
2,979,891 + Psyr_2566 0.24 -0.7
2,980,563 - +2.3
2,980,682 - -1.2
2,980,726 - -0.1
2,980,848 - Psyr_2567 0.14 -0.0
2,980,848 - Psyr_2567 0.14 +0.9
2,981,011 + Psyr_2567 0.28 +1.3
2,981,011 + Psyr_2567 0.28 -0.3
2,981,011 + Psyr_2567 0.28 -3.8
2,981,011 + Psyr_2567 0.28 -1.8
2,981,011 + Psyr_2567 0.28 -0.1
2,981,011 + Psyr_2567 0.28 -1.7
2,981,011 + Psyr_2567 0.28 -0.7
2,981,011 + Psyr_2567 0.28 -1.2
2,981,012 - Psyr_2567 0.28 -1.3
2,981,015 + Psyr_2567 0.29 +1.6
2,981,015 + Psyr_2567 0.29 +0.1
2,981,015 + Psyr_2567 0.29 +1.1
2,981,015 + Psyr_2567 0.29 -2.2
2,981,015 + Psyr_2567 0.29 -1.4
2,981,015 + Psyr_2567 0.29 -3.1
2,981,015 + Psyr_2567 0.29 +0.3
2,981,015 + Psyr_2567 0.29 +2.0
2,981,015 + Psyr_2567 0.29 -0.4
2,981,015 + Psyr_2567 0.29 -0.7
2,981,015 + Psyr_2567 0.29 -0.8
2,981,016 - Psyr_2567 0.29 -1.8
2,981,016 - Psyr_2567 0.29 +2.3
2,981,016 - Psyr_2567 0.29 -0.4
2,981,016 - Psyr_2567 0.29 -1.0
2,981,016 - Psyr_2567 0.29 -0.6
2,981,016 - Psyr_2567 0.29 +1.3
2,981,016 - Psyr_2567 0.29 +3.0
2,981,016 - Psyr_2567 0.29 +0.8
2,981,016 - Psyr_2567 0.29 -0.8
2,981,016 - Psyr_2567 0.29 +0.7
2,981,358 - Psyr_2567 0.59 +0.4
2,981,358 - Psyr_2567 0.59 +0.3
2,981,397 - Psyr_2567 0.63 -1.0
2,981,624 + Psyr_2567 0.83 -0.3
2,981,625 - Psyr_2567 0.83 -0.6

Or see this region's nucleotide sequence