Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2564 and Psyr_2565 are separated by 111 nucleotides Psyr_2565 and Psyr_2566 are separated by 3 nucleotides Psyr_2566 and Psyr_2567 are separated by 40 nucleotides
Psyr_2564: Psyr_2564 - transcriptional regulator, GntR family, at 2,978,136 to 2,978,876
_2564
Psyr_2565: Psyr_2565 - dihydroxyacetone kinase DhaL subunit, at 2,978,988 to 2,979,650
_2565
Psyr_2566: Psyr_2566 - dihydroxyacetone kinase DhaK subunit, at 2,979,654 to 2,980,655
_2566
Psyr_2567: Psyr_2567 - Zinc-containing alcohol dehydrogenase superfamily, at 2,980,696 to 2,981,811
_2567
Position (kb)
2979
2980
2981 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2978.686 kb on - strand, within Psyr_2564 at 2978.703 kb on - strand, within Psyr_2564 at 2978.764 kb on + strand, within Psyr_2564 at 2978.765 kb on - strand, within Psyr_2564 at 2978.765 kb on - strand, within Psyr_2564 at 2978.891 kb on - strand at 2978.892 kb on + strand at 2978.893 kb on - strand at 2978.990 kb on - strand at 2979.108 kb on + strand, within Psyr_2565 at 2979.479 kb on + strand, within Psyr_2565 at 2979.770 kb on - strand, within Psyr_2566 at 2979.770 kb on - strand, within Psyr_2566 at 2979.770 kb on - strand, within Psyr_2566 at 2979.770 kb on - strand, within Psyr_2566 at 2979.770 kb on - strand, within Psyr_2566 at 2979.781 kb on + strand, within Psyr_2566 at 2979.781 kb on + strand, within Psyr_2566 at 2979.782 kb on - strand, within Psyr_2566 at 2979.891 kb on + strand, within Psyr_2566 at 2980.563 kb on - strand at 2980.682 kb on - strand at 2980.726 kb on - strand at 2980.848 kb on - strand, within Psyr_2567 at 2980.848 kb on - strand, within Psyr_2567 at 2981.011 kb on + strand, within Psyr_2567 at 2981.011 kb on + strand, within Psyr_2567 at 2981.011 kb on + strand, within Psyr_2567 at 2981.011 kb on + strand, within Psyr_2567 at 2981.011 kb on + strand, within Psyr_2567 at 2981.011 kb on + strand, within Psyr_2567 at 2981.011 kb on + strand, within Psyr_2567 at 2981.011 kb on + strand, within Psyr_2567 at 2981.012 kb on - strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.015 kb on + strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.016 kb on - strand, within Psyr_2567 at 2981.358 kb on - strand, within Psyr_2567 at 2981.358 kb on - strand, within Psyr_2567 at 2981.397 kb on - strand, within Psyr_2567 at 2981.624 kb on + strand, within Psyr_2567 at 2981.625 kb on - strand, within Psyr_2567
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 2,978,686 - Psyr_2564 0.74 -0.7 2,978,703 - Psyr_2564 0.77 +0.4 2,978,764 + Psyr_2564 0.85 +1.3 2,978,765 - Psyr_2564 0.85 +0.5 2,978,765 - Psyr_2564 0.85 +0.2 2,978,891 - -1.3 2,978,892 + -0.8 2,978,893 - -0.0 2,978,990 - -0.2 2,979,108 + Psyr_2565 0.18 -2.2 2,979,479 + Psyr_2565 0.74 -1.2 2,979,770 - Psyr_2566 0.12 -0.4 2,979,770 - Psyr_2566 0.12 -0.9 2,979,770 - Psyr_2566 0.12 -1.8 2,979,770 - Psyr_2566 0.12 -0.8 2,979,770 - Psyr_2566 0.12 +0.7 2,979,781 + Psyr_2566 0.13 -0.7 2,979,781 + Psyr_2566 0.13 +0.7 2,979,782 - Psyr_2566 0.13 -0.7 2,979,891 + Psyr_2566 0.24 -0.7 2,980,563 - +2.3 2,980,682 - -1.2 2,980,726 - -0.1 2,980,848 - Psyr_2567 0.14 -0.0 2,980,848 - Psyr_2567 0.14 +0.9 2,981,011 + Psyr_2567 0.28 +1.3 2,981,011 + Psyr_2567 0.28 -0.3 2,981,011 + Psyr_2567 0.28 -3.8 2,981,011 + Psyr_2567 0.28 -1.8 2,981,011 + Psyr_2567 0.28 -0.1 2,981,011 + Psyr_2567 0.28 -1.7 2,981,011 + Psyr_2567 0.28 -0.7 2,981,011 + Psyr_2567 0.28 -1.2 2,981,012 - Psyr_2567 0.28 -1.3 2,981,015 + Psyr_2567 0.29 +1.6 2,981,015 + Psyr_2567 0.29 +0.1 2,981,015 + Psyr_2567 0.29 +1.1 2,981,015 + Psyr_2567 0.29 -2.2 2,981,015 + Psyr_2567 0.29 -1.4 2,981,015 + Psyr_2567 0.29 -3.1 2,981,015 + Psyr_2567 0.29 +0.3 2,981,015 + Psyr_2567 0.29 +2.0 2,981,015 + Psyr_2567 0.29 -0.4 2,981,015 + Psyr_2567 0.29 -0.7 2,981,015 + Psyr_2567 0.29 -0.8 2,981,016 - Psyr_2567 0.29 -1.8 2,981,016 - Psyr_2567 0.29 +2.3 2,981,016 - Psyr_2567 0.29 -0.4 2,981,016 - Psyr_2567 0.29 -1.0 2,981,016 - Psyr_2567 0.29 -0.6 2,981,016 - Psyr_2567 0.29 +1.3 2,981,016 - Psyr_2567 0.29 +3.0 2,981,016 - Psyr_2567 0.29 +0.8 2,981,016 - Psyr_2567 0.29 -0.8 2,981,016 - Psyr_2567 0.29 +0.7 2,981,358 - Psyr_2567 0.59 +0.4 2,981,358 - Psyr_2567 0.59 +0.3 2,981,397 - Psyr_2567 0.63 -1.0 2,981,624 + Psyr_2567 0.83 -0.3 2,981,625 - Psyr_2567 0.83 -0.6
Or see this region's nucleotide sequence