Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2399

Experiment: KB with Levodopa 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2398 and Psyr_2399 overlap by 4 nucleotidesPsyr_2399 and Psyr_2400 are separated by 6 nucleotidesPsyr_2400 and Psyr_2401 overlap by 16 nucleotides Psyr_2398: Psyr_2398 - ABC transporter, at 2,780,195 to 2,781,349 _2398 Psyr_2399: Psyr_2399 - Binding-protein-dependent transport systems inner membrane component, at 2,781,346 to 2,782,161 _2399 Psyr_2400: Psyr_2400 - Binding-protein-dependent transport systems inner membrane component, at 2,782,168 to 2,783,124 _2400 Psyr_2401: Psyr_2401 - extracellular solute-binding protein, family 1, at 2,783,109 to 2,784,134 _2401 Position (kb) 2781 2782 2783Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2780.412 kb on - strand, within Psyr_2398at 2780.745 kb on + strand, within Psyr_2398at 2780.745 kb on + strand, within Psyr_2398at 2780.745 kb on + strand, within Psyr_2398at 2780.746 kb on - strand, within Psyr_2398at 2781.060 kb on + strand, within Psyr_2398at 2781.289 kb on + strandat 2781.354 kb on + strandat 2781.354 kb on + strandat 2781.354 kb on + strandat 2781.354 kb on + strandat 2781.355 kb on - strandat 2781.355 kb on - strandat 2781.355 kb on - strandat 2781.355 kb on - strandat 2781.611 kb on + strand, within Psyr_2399at 2781.611 kb on + strand, within Psyr_2399at 2781.612 kb on - strand, within Psyr_2399at 2781.612 kb on - strand, within Psyr_2399at 2781.612 kb on - strand, within Psyr_2399at 2781.612 kb on - strand, within Psyr_2399at 2781.612 kb on - strand, within Psyr_2399at 2781.785 kb on + strand, within Psyr_2399at 2782.112 kb on + strandat 2782.112 kb on + strandat 2782.223 kb on + strandat 2782.223 kb on + strandat 2782.223 kb on + strandat 2782.223 kb on + strandat 2782.224 kb on - strandat 2782.224 kb on - strandat 2782.364 kb on + strand, within Psyr_2400at 2782.364 kb on + strand, within Psyr_2400at 2782.364 kb on + strand, within Psyr_2400at 2782.364 kb on + strand, within Psyr_2400at 2782.364 kb on + strand, within Psyr_2400at 2782.364 kb on + strand, within Psyr_2400at 2782.364 kb on + strand, within Psyr_2400at 2782.364 kb on + strand, within Psyr_2400at 2782.365 kb on - strand, within Psyr_2400at 2782.365 kb on - strand, within Psyr_2400at 2782.365 kb on - strand, within Psyr_2400at 2782.365 kb on - strand, within Psyr_2400at 2782.553 kb on + strand, within Psyr_2400at 2782.553 kb on + strand, within Psyr_2400at 2782.553 kb on + strand, within Psyr_2400at 2782.553 kb on + strand, within Psyr_2400at 2782.553 kb on + strand, within Psyr_2400at 2782.553 kb on + strand, within Psyr_2400at 2782.553 kb on + strand, within Psyr_2400at 2782.553 kb on + strand, within Psyr_2400at 2782.553 kb on + strand, within Psyr_2400at 2782.554 kb on - strand, within Psyr_2400at 2782.554 kb on - strand, within Psyr_2400at 2782.554 kb on - strand, within Psyr_2400at 2782.554 kb on - strand, within Psyr_2400at 2782.554 kb on - strand, within Psyr_2400at 2782.676 kb on + strand, within Psyr_2400at 2782.827 kb on + strand, within Psyr_2400at 2782.827 kb on + strand, within Psyr_2400at 2782.828 kb on - strand, within Psyr_2400at 2782.874 kb on + strand, within Psyr_2400at 2782.874 kb on + strand, within Psyr_2400at 2782.874 kb on + strand, within Psyr_2400at 2782.875 kb on - strand, within Psyr_2400at 2782.875 kb on - strand, within Psyr_2400at 2782.875 kb on - strand, within Psyr_2400at 2782.918 kb on + strand, within Psyr_2400at 2783.110 kb on + strandat 2783.110 kb on + strandat 2783.110 kb on + strandat 2783.110 kb on + strandat 2783.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM
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2,780,412 - Psyr_2398 0.19 -2.1
2,780,745 + Psyr_2398 0.48 +0.1
2,780,745 + Psyr_2398 0.48 +1.2
2,780,745 + Psyr_2398 0.48 -0.1
2,780,746 - Psyr_2398 0.48 +0.1
2,781,060 + Psyr_2398 0.75 +0.1
2,781,289 + +2.8
2,781,354 + +0.4
2,781,354 + -0.5
2,781,354 + -1.2
2,781,354 + -0.2
2,781,355 - -0.9
2,781,355 - +0.7
2,781,355 - +0.7
2,781,355 - -0.4
2,781,611 + Psyr_2399 0.32 -0.6
2,781,611 + Psyr_2399 0.32 -1.1
2,781,612 - Psyr_2399 0.33 -0.4
2,781,612 - Psyr_2399 0.33 -1.5
2,781,612 - Psyr_2399 0.33 -0.5
2,781,612 - Psyr_2399 0.33 -1.1
2,781,612 - Psyr_2399 0.33 -0.4
2,781,785 + Psyr_2399 0.54 -0.5
2,782,112 + +1.6
2,782,112 + -1.1
2,782,223 + -0.5
2,782,223 + +0.2
2,782,223 + +0.3
2,782,223 + +0.2
2,782,224 - -1.4
2,782,224 - +0.0
2,782,364 + Psyr_2400 0.20 -0.1
2,782,364 + Psyr_2400 0.20 +0.1
2,782,364 + Psyr_2400 0.20 -0.3
2,782,364 + Psyr_2400 0.20 -0.7
2,782,364 + Psyr_2400 0.20 -1.6
2,782,364 + Psyr_2400 0.20 -0.5
2,782,364 + Psyr_2400 0.20 -0.9
2,782,364 + Psyr_2400 0.20 +1.0
2,782,365 - Psyr_2400 0.21 +3.5
2,782,365 - Psyr_2400 0.21 +0.1
2,782,365 - Psyr_2400 0.21 +0.4
2,782,365 - Psyr_2400 0.21 -2.0
2,782,553 + Psyr_2400 0.40 +0.4
2,782,553 + Psyr_2400 0.40 -0.0
2,782,553 + Psyr_2400 0.40 +0.6
2,782,553 + Psyr_2400 0.40 -2.1
2,782,553 + Psyr_2400 0.40 -0.0
2,782,553 + Psyr_2400 0.40 +1.1
2,782,553 + Psyr_2400 0.40 +1.2
2,782,553 + Psyr_2400 0.40 +0.3
2,782,553 + Psyr_2400 0.40 +1.4
2,782,554 - Psyr_2400 0.40 -1.1
2,782,554 - Psyr_2400 0.40 -0.2
2,782,554 - Psyr_2400 0.40 -1.8
2,782,554 - Psyr_2400 0.40 +0.8
2,782,554 - Psyr_2400 0.40 -0.5
2,782,676 + Psyr_2400 0.53 +0.4
2,782,827 + Psyr_2400 0.69 +0.4
2,782,827 + Psyr_2400 0.69 -2.0
2,782,828 - Psyr_2400 0.69 -0.4
2,782,874 + Psyr_2400 0.74 +1.0
2,782,874 + Psyr_2400 0.74 -0.7
2,782,874 + Psyr_2400 0.74 -0.4
2,782,875 - Psyr_2400 0.74 -0.2
2,782,875 - Psyr_2400 0.74 -0.1
2,782,875 - Psyr_2400 0.74 +1.4
2,782,918 + Psyr_2400 0.78 -2.0
2,783,110 + -1.0
2,783,110 + -0.7
2,783,110 + +0.8
2,783,110 + -0.0
2,783,111 - +0.4

Or see this region's nucleotide sequence