Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2256

Experiment: KB with Levodopa 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2254 and Psyr_2255 overlap by 4 nucleotidesPsyr_2255 and Psyr_2256 are separated by 41 nucleotidesPsyr_2256 and Psyr_2257 overlap by 7 nucleotides Psyr_2254: Psyr_2254 - Phosphonate metabolism PhnJ, at 2,619,171 to 2,620,058 _2254 Psyr_2255: Psyr_2255 - ABC transporter, at 2,620,055 to 2,620,876 _2255 Psyr_2256: Psyr_2256 - ABC transporter, at 2,620,918 to 2,621,634 _2256 Psyr_2257: Psyr_2257 - Amidohydrolase, at 2,621,628 to 2,622,773 _2257 Position (kb) 2620 2621 2622Strain fitness (log2 ratio) -2 -1 0 1 2at 2620.146 kb on - strand, within Psyr_2255at 2620.146 kb on - strand, within Psyr_2255at 2620.326 kb on - strand, within Psyr_2255at 2620.713 kb on + strand, within Psyr_2255at 2620.994 kb on + strand, within Psyr_2256at 2621.098 kb on + strand, within Psyr_2256at 2621.098 kb on + strand, within Psyr_2256at 2621.098 kb on + strand, within Psyr_2256at 2621.098 kb on + strand, within Psyr_2256at 2621.099 kb on - strand, within Psyr_2256at 2621.680 kb on + strandat 2622.171 kb on + strand, within Psyr_2257at 2622.183 kb on + strand, within Psyr_2257at 2622.183 kb on + strand, within Psyr_2257at 2622.183 kb on + strand, within Psyr_2257at 2622.183 kb on + strand, within Psyr_2257at 2622.184 kb on - strand, within Psyr_2257at 2622.184 kb on - strand, within Psyr_2257at 2622.184 kb on - strand, within Psyr_2257at 2622.184 kb on - strand, within Psyr_2257at 2622.195 kb on + strand, within Psyr_2257at 2622.196 kb on - strand, within Psyr_2257at 2622.543 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM
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2,620,146 - Psyr_2255 0.11 -1.2
2,620,146 - Psyr_2255 0.11 -1.8
2,620,326 - Psyr_2255 0.33 -1.0
2,620,713 + Psyr_2255 0.80 -0.4
2,620,994 + Psyr_2256 0.11 -1.9
2,621,098 + Psyr_2256 0.25 -1.2
2,621,098 + Psyr_2256 0.25 -0.8
2,621,098 + Psyr_2256 0.25 +0.2
2,621,098 + Psyr_2256 0.25 +2.5
2,621,099 - Psyr_2256 0.25 -0.7
2,621,680 + -1.0
2,622,171 + Psyr_2257 0.47 -0.1
2,622,183 + Psyr_2257 0.48 +1.9
2,622,183 + Psyr_2257 0.48 -0.2
2,622,183 + Psyr_2257 0.48 -1.3
2,622,183 + Psyr_2257 0.48 -1.1
2,622,184 - Psyr_2257 0.49 +0.2
2,622,184 - Psyr_2257 0.49 +0.1
2,622,184 - Psyr_2257 0.49 +0.5
2,622,184 - Psyr_2257 0.49 +0.2
2,622,195 + Psyr_2257 0.49 +0.1
2,622,196 - Psyr_2257 0.50 +0.2
2,622,543 + -0.4

Or see this region's nucleotide sequence