Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1944

Experiment: KB with Levodopa 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1942 and Psyr_1943 are separated by 78 nucleotidesPsyr_1943 and Psyr_1944 are separated by 316 nucleotidesPsyr_1944 and Psyr_1945 are separated by 95 nucleotides Psyr_1942: Psyr_1942 - conserved hypothetical protein, at 2,215,461 to 2,215,985 _1942 Psyr_1943: Psyr_1943 - Sigma-70 region 2, at 2,216,064 to 2,216,600 _1943 Psyr_1944: Psyr_1944 - Thioesterase, at 2,216,917 to 2,217,675 _1944 Psyr_1945: Psyr_1945 - Non-ribosomal peptide synthase:Amino acid adenylation, at 2,217,771 to 2,230,781 _1945 Position (kb) 2216 2217 2218Strain fitness (log2 ratio) -3 -2 -1 0 1at 2216.195 kb on - strand, within Psyr_1943at 2216.338 kb on + strand, within Psyr_1943at 2216.338 kb on + strand, within Psyr_1943at 2216.338 kb on + strand, within Psyr_1943at 2216.339 kb on - strand, within Psyr_1943at 2216.339 kb on - strand, within Psyr_1943at 2216.404 kb on + strand, within Psyr_1943at 2216.405 kb on - strand, within Psyr_1943at 2216.405 kb on - strand, within Psyr_1943at 2216.536 kb on + strand, within Psyr_1943at 2216.536 kb on + strand, within Psyr_1943at 2216.536 kb on + strand, within Psyr_1943at 2216.536 kb on + strand, within Psyr_1943at 2216.536 kb on + strand, within Psyr_1943at 2216.537 kb on - strand, within Psyr_1943at 2216.537 kb on - strand, within Psyr_1943at 2216.537 kb on - strand, within Psyr_1943at 2216.537 kb on - strand, within Psyr_1943at 2216.576 kb on + strandat 2216.577 kb on - strandat 2216.577 kb on - strandat 2216.577 kb on - strandat 2216.586 kb on + strandat 2216.587 kb on - strandat 2216.620 kb on + strandat 2216.727 kb on + strandat 2216.773 kb on + strandat 2216.774 kb on - strandat 2216.777 kb on + strandat 2216.778 kb on - strandat 2216.838 kb on + strandat 2216.839 kb on - strandat 2216.885 kb on + strandat 2216.886 kb on - strandat 2216.886 kb on - strandat 2216.956 kb on + strandat 2216.980 kb on + strandat 2216.980 kb on + strandat 2216.980 kb on + strandat 2216.981 kb on - strandat 2216.981 kb on - strandat 2216.981 kb on - strandat 2217.137 kb on - strand, within Psyr_1944at 2217.421 kb on + strand, within Psyr_1944at 2217.458 kb on + strand, within Psyr_1944at 2217.459 kb on - strand, within Psyr_1944at 2217.459 kb on - strand, within Psyr_1944at 2217.459 kb on - strand, within Psyr_1944at 2217.563 kb on - strand, within Psyr_1944at 2217.737 kb on + strandat 2217.738 kb on - strandat 2217.997 kb on - strandat 2217.997 kb on - strandat 2218.023 kb on + strandat 2218.024 kb on - strandat 2218.024 kb on - strandat 2218.284 kb on + strandat 2218.285 kb on - strandat 2218.285 kb on - strandat 2218.422 kb on + strandat 2218.423 kb on - strandat 2218.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM
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2,216,195 - Psyr_1943 0.24 -0.6
2,216,338 + Psyr_1943 0.51 +0.0
2,216,338 + Psyr_1943 0.51 -2.4
2,216,338 + Psyr_1943 0.51 +1.0
2,216,339 - Psyr_1943 0.51 -1.3
2,216,339 - Psyr_1943 0.51 -0.9
2,216,404 + Psyr_1943 0.63 -0.8
2,216,405 - Psyr_1943 0.64 +0.1
2,216,405 - Psyr_1943 0.64 -1.8
2,216,536 + Psyr_1943 0.88 -0.7
2,216,536 + Psyr_1943 0.88 -1.1
2,216,536 + Psyr_1943 0.88 -0.8
2,216,536 + Psyr_1943 0.88 +0.8
2,216,536 + Psyr_1943 0.88 -2.4
2,216,537 - Psyr_1943 0.88 +1.4
2,216,537 - Psyr_1943 0.88 +0.4
2,216,537 - Psyr_1943 0.88 -0.1
2,216,537 - Psyr_1943 0.88 +1.0
2,216,576 + -0.7
2,216,577 - +1.2
2,216,577 - -0.3
2,216,577 - -2.0
2,216,586 + -0.1
2,216,587 - +1.3
2,216,620 + -1.8
2,216,727 + -1.2
2,216,773 + +0.8
2,216,774 - -0.1
2,216,777 + +0.4
2,216,778 - +0.0
2,216,838 + -0.3
2,216,839 - +0.1
2,216,885 + -0.1
2,216,886 - +0.1
2,216,886 - -1.5
2,216,956 + -0.2
2,216,980 + -0.6
2,216,980 + +0.5
2,216,980 + +1.0
2,216,981 - -2.2
2,216,981 - +0.4
2,216,981 - +0.0
2,217,137 - Psyr_1944 0.29 +0.5
2,217,421 + Psyr_1944 0.66 -2.8
2,217,458 + Psyr_1944 0.71 -1.6
2,217,459 - Psyr_1944 0.71 -0.1
2,217,459 - Psyr_1944 0.71 -2.4
2,217,459 - Psyr_1944 0.71 -2.1
2,217,563 - Psyr_1944 0.85 +0.0
2,217,737 + +0.8
2,217,738 - -0.4
2,217,997 - +1.0
2,217,997 - +1.4
2,218,023 + -0.7
2,218,024 - +0.4
2,218,024 - -0.4
2,218,284 + +0.4
2,218,285 - -0.6
2,218,285 - +0.4
2,218,422 + -3.0
2,218,423 - +0.8
2,218,501 - -2.9

Or see this region's nucleotide sequence