Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1839

Experiment: KB with Levodopa 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1838 and Psyr_1839 are separated by 28 nucleotidesPsyr_1839 and Psyr_1840 are separated by 116 nucleotidesPsyr_1840 and Psyr_1841 are separated by 82 nucleotides Psyr_1838: Psyr_1838 - Peptidase U61, LD-carboxypeptidase A, at 2,118,451 to 2,119,386 _1838 Psyr_1839: Psyr_1839 - Benzoate membrane transport protein, at 2,119,415 to 2,120,608 _1839 Psyr_1840: Psyr_1840 - transcriptional regulator, MarR family, at 2,120,725 to 2,121,195 _1840 Psyr_1841: Psyr_1841 - Aminotransferase, class I and II, at 2,121,278 to 2,122,444 _1841 Position (kb) 2119 2120 2121Strain fitness (log2 ratio) -3 -2 -1 0 1at 2118.416 kb on + strandat 2118.416 kb on + strandat 2118.722 kb on - strand, within Psyr_1838at 2119.488 kb on - strandat 2119.717 kb on + strand, within Psyr_1839at 2119.717 kb on + strand, within Psyr_1839at 2119.717 kb on + strand, within Psyr_1839at 2119.718 kb on - strand, within Psyr_1839at 2119.719 kb on + strand, within Psyr_1839at 2119.720 kb on - strand, within Psyr_1839at 2119.855 kb on + strand, within Psyr_1839at 2120.109 kb on + strand, within Psyr_1839at 2120.109 kb on + strand, within Psyr_1839at 2120.110 kb on - strand, within Psyr_1839at 2120.110 kb on - strand, within Psyr_1839at 2120.635 kb on + strandat 2120.655 kb on - strandat 2120.681 kb on + strandat 2120.682 kb on - strandat 2121.076 kb on + strand, within Psyr_1840at 2121.076 kb on + strand, within Psyr_1840at 2121.271 kb on - strandat 2121.271 kb on - strandat 2121.271 kb on - strandat 2121.578 kb on + strand, within Psyr_1841at 2121.578 kb on + strand, within Psyr_1841at 2121.578 kb on + strand, within Psyr_1841at 2121.578 kb on + strand, within Psyr_1841at 2121.579 kb on - strand, within Psyr_1841

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM
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2,118,416 + +1.0
2,118,416 + +1.3
2,118,722 - Psyr_1838 0.29 -3.4
2,119,488 - +0.4
2,119,717 + Psyr_1839 0.25 -0.5
2,119,717 + Psyr_1839 0.25 -1.2
2,119,717 + Psyr_1839 0.25 -1.1
2,119,718 - Psyr_1839 0.25 -1.0
2,119,719 + Psyr_1839 0.25 -2.3
2,119,720 - Psyr_1839 0.26 -1.2
2,119,855 + Psyr_1839 0.37 +1.5
2,120,109 + Psyr_1839 0.58 +0.5
2,120,109 + Psyr_1839 0.58 +0.1
2,120,110 - Psyr_1839 0.58 -1.5
2,120,110 - Psyr_1839 0.58 -3.0
2,120,635 + -0.5
2,120,655 - +1.2
2,120,681 + -3.4
2,120,682 - +0.6
2,121,076 + Psyr_1840 0.75 -0.5
2,121,076 + Psyr_1840 0.75 -2.1
2,121,271 - +1.0
2,121,271 - +0.0
2,121,271 - +0.0
2,121,578 + Psyr_1841 0.26 +1.3
2,121,578 + Psyr_1841 0.26 -2.1
2,121,578 + Psyr_1841 0.26 +0.3
2,121,578 + Psyr_1841 0.26 +1.3
2,121,579 - Psyr_1841 0.26 +0.0

Or see this region's nucleotide sequence