Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1609 and Psyr_1610 are separated by 602 nucleotides Psyr_1610 and Psyr_1611 are separated by 90 nucleotides Psyr_1611 and Psyr_1612 overlap by 1 nucleotides
Psyr_1609: Psyr_1609 - Aspartyl aminopeptidase, at 1,811,972 to 1,813,261
_1609
Psyr_1610: Psyr_1610 - ribosomal large subunit pseudouridine synthase A, at 1,813,864 to 1,814,499
_1610
Psyr_1611: Psyr_1611 - cell division topological specificity factor MinE, at 1,814,590 to 1,814,844
_1611
Psyr_1612: Psyr_1612 - septum site-determining protein MinD, at 1,814,844 to 1,815,656
_1612
Position (kb) 1813
1814
1815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1812.937 kb on - strand, within Psyr_1609 at 1813.108 kb on - strand, within Psyr_1609 at 1813.108 kb on - strand, within Psyr_1609 at 1813.125 kb on - strand, within Psyr_1609 at 1813.125 kb on - strand, within Psyr_1609 at 1813.135 kb on + strand at 1813.136 kb on - strand at 1813.136 kb on - strand at 1813.234 kb on + strand at 1813.234 kb on + strand at 1813.261 kb on + strand at 1813.265 kb on + strand at 1813.265 kb on + strand at 1813.265 kb on + strand at 1813.265 kb on + strand at 1813.265 kb on + strand at 1813.265 kb on + strand at 1813.265 kb on + strand at 1813.266 kb on - strand at 1813.266 kb on - strand at 1813.266 kb on - strand at 1813.266 kb on - strand at 1813.266 kb on - strand at 1813.845 kb on - strand at 1814.078 kb on + strand, within Psyr_1610 at 1814.078 kb on + strand, within Psyr_1610 at 1814.078 kb on + strand, within Psyr_1610 at 1814.078 kb on + strand, within Psyr_1610 at 1814.079 kb on - strand, within Psyr_1610 at 1814.079 kb on - strand, within Psyr_1610 at 1814.079 kb on - strand, within Psyr_1610 at 1814.079 kb on - strand, within Psyr_1610 at 1814.235 kb on - strand, within Psyr_1610 at 1814.235 kb on - strand, within Psyr_1610 at 1814.235 kb on - strand, within Psyr_1610 at 1814.346 kb on + strand, within Psyr_1610 at 1814.883 kb on - strand at 1815.313 kb on + strand, within Psyr_1612 at 1815.314 kb on - strand, within Psyr_1612
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 1,812,937 - Psyr_1609 0.75 +0.2 1,813,108 - Psyr_1609 0.88 +0.5 1,813,108 - Psyr_1609 0.88 +0.1 1,813,125 - Psyr_1609 0.89 +2.1 1,813,125 - Psyr_1609 0.89 +1.1 1,813,135 + -0.7 1,813,136 - +1.2 1,813,136 - +1.4 1,813,234 + +0.5 1,813,234 + +0.4 1,813,261 + +1.5 1,813,265 + -2.2 1,813,265 + +3.4 1,813,265 + -0.0 1,813,265 + +0.0 1,813,265 + -1.5 1,813,265 + +0.3 1,813,265 + +0.3 1,813,266 - +0.2 1,813,266 - -0.5 1,813,266 - -0.0 1,813,266 - -0.9 1,813,266 - -0.4 1,813,845 - -1.0 1,814,078 + Psyr_1610 0.34 -2.1 1,814,078 + Psyr_1610 0.34 -0.4 1,814,078 + Psyr_1610 0.34 -2.4 1,814,078 + Psyr_1610 0.34 +1.1 1,814,079 - Psyr_1610 0.34 +2.0 1,814,079 - Psyr_1610 0.34 -1.1 1,814,079 - Psyr_1610 0.34 -1.3 1,814,079 - Psyr_1610 0.34 -1.3 1,814,235 - Psyr_1610 0.58 +1.9 1,814,235 - Psyr_1610 0.58 -0.5 1,814,235 - Psyr_1610 0.58 -1.3 1,814,346 + Psyr_1610 0.76 -0.3 1,814,883 - -3.1 1,815,313 + Psyr_1612 0.58 -1.1 1,815,314 - Psyr_1612 0.58 -3.5
Or see this region's nucleotide sequence