Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0744 and Psyr_0745 overlap by 124 nucleotides Psyr_0745 and Psyr_0746 are separated by 61 nucleotides Psyr_0746 and Psyr_0747 are separated by 25 nucleotides Psyr_0747 and Psyr_0748 are separated by 209 nucleotides
Psyr_0744: Psyr_0744 - CDS, at 847,452 to 848,153
_0744
Psyr_0745: Psyr_0745 - CDS, at 848,030 to 848,569
_0745
Psyr_0746: Psyr_0746 - IS66 Orf2 like protein, at 848,631 to 848,996
_0746
Psyr_0747: Psyr_0747 - CDS, at 849,022 to 849,339
_0747
Psyr_0748: Psyr_0748 - Major facilitator superfamily, at 849,549 to 850,991
_0748
Position (kb)
848
849 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 847.675 kb on + strand, within Psyr_0744 at 847.675 kb on + strand, within Psyr_0744 at 847.675 kb on + strand, within Psyr_0744 at 847.726 kb on + strand, within Psyr_0744 at 847.726 kb on + strand, within Psyr_0744 at 847.726 kb on + strand, within Psyr_0744 at 847.726 kb on + strand, within Psyr_0744 at 847.727 kb on - strand, within Psyr_0744 at 847.727 kb on - strand, within Psyr_0744 at 847.727 kb on - strand, within Psyr_0744 at 847.727 kb on - strand, within Psyr_0744 at 847.727 kb on - strand, within Psyr_0744 at 847.809 kb on + strand, within Psyr_0744 at 847.810 kb on - strand, within Psyr_0744 at 847.810 kb on - strand, within Psyr_0744 at 847.810 kb on - strand, within Psyr_0744 at 847.810 kb on - strand, within Psyr_0744 at 848.084 kb on + strand at 848.084 kb on + strand at 848.084 kb on + strand at 848.084 kb on + strand at 848.088 kb on + strand at 848.088 kb on + strand at 848.088 kb on + strand at 848.101 kb on + strand at 848.102 kb on - strand at 848.133 kb on - strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.153 kb on + strand at 848.154 kb on - strand, within Psyr_0745 at 848.154 kb on - strand, within Psyr_0745 at 848.154 kb on - strand, within Psyr_0745 at 848.154 kb on - strand, within Psyr_0745 at 848.154 kb on - strand, within Psyr_0745 at 848.154 kb on - strand, within Psyr_0745 at 848.154 kb on - strand, within Psyr_0745 at 848.154 kb on - strand, within Psyr_0745 at 848.187 kb on - strand, within Psyr_0745 at 848.501 kb on + strand, within Psyr_0745 at 848.502 kb on - strand, within Psyr_0745 at 848.502 kb on - strand, within Psyr_0745 at 848.502 kb on - strand, within Psyr_0745 at 848.502 kb on - strand, within Psyr_0745 at 848.540 kb on - strand at 848.661 kb on + strand at 848.661 kb on + strand at 848.685 kb on + strand, within Psyr_0746 at 848.686 kb on - strand, within Psyr_0746 at 848.689 kb on - strand, within Psyr_0746 at 848.738 kb on + strand, within Psyr_0746 at 848.738 kb on + strand, within Psyr_0746 at 848.739 kb on - strand, within Psyr_0746 at 848.848 kb on + strand, within Psyr_0746 at 848.849 kb on - strand, within Psyr_0746 at 849.023 kb on + strand at 849.024 kb on - strand at 849.024 kb on - strand at 849.024 kb on - strand at 849.024 kb on - strand at 849.079 kb on + strand, within Psyr_0747 at 849.079 kb on + strand, within Psyr_0747 at 849.079 kb on + strand, within Psyr_0747 at 849.080 kb on - strand, within Psyr_0747 at 849.184 kb on - strand, within Psyr_0747 at 849.204 kb on + strand, within Psyr_0747 at 849.204 kb on + strand, within Psyr_0747 at 849.204 kb on + strand, within Psyr_0747 at 849.205 kb on - strand, within Psyr_0747 at 849.205 kb on - strand, within Psyr_0747 at 849.205 kb on - strand, within Psyr_0747 at 849.269 kb on + strand, within Psyr_0747 at 849.276 kb on + strand, within Psyr_0747 at 849.276 kb on + strand, within Psyr_0747 at 849.276 kb on + strand, within Psyr_0747 at 849.276 kb on + strand, within Psyr_0747 at 849.276 kb on + strand, within Psyr_0747 at 849.276 kb on + strand, within Psyr_0747 at 849.276 kb on + strand, within Psyr_0747 at 849.276 kb on + strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.277 kb on - strand, within Psyr_0747 at 849.310 kb on - strand at 849.324 kb on - strand at 849.361 kb on + strand at 849.362 kb on - strand at 849.362 kb on - strand at 849.387 kb on - strand at 849.390 kb on + strand at 849.390 kb on + strand at 849.390 kb on + strand at 849.391 kb on - strand at 849.399 kb on + strand at 849.399 kb on + strand at 849.399 kb on + strand at 849.403 kb on - strand at 849.403 kb on - strand at 849.428 kb on + strand at 849.428 kb on + strand at 849.428 kb on + strand at 849.429 kb on - strand at 849.429 kb on - strand at 849.429 kb on - strand at 849.432 kb on + strand at 849.432 kb on + strand at 849.432 kb on + strand at 849.433 kb on - strand at 849.433 kb on - strand at 849.453 kb on + strand at 849.532 kb on - strand at 849.534 kb on + strand at 849.534 kb on + strand at 849.535 kb on - strand at 849.621 kb on + strand at 849.622 kb on - strand at 849.622 kb on - strand at 849.622 kb on - strand at 849.680 kb on + strand at 849.689 kb on + strand at 849.690 kb on - strand at 849.744 kb on + strand, within Psyr_0748 at 849.744 kb on + strand, within Psyr_0748 at 849.744 kb on + strand, within Psyr_0748 at 849.744 kb on + strand, within Psyr_0748 at 849.744 kb on + strand, within Psyr_0748 at 849.745 kb on - strand, within Psyr_0748 at 849.745 kb on - strand, within Psyr_0748 at 849.745 kb on - strand, within Psyr_0748 at 849.745 kb on - strand, within Psyr_0748 at 849.745 kb on - strand, within Psyr_0748 at 849.758 kb on + strand, within Psyr_0748 at 849.814 kb on - strand, within Psyr_0748 at 849.868 kb on + strand, within Psyr_0748 at 849.868 kb on + strand, within Psyr_0748 at 849.869 kb on - strand, within Psyr_0748 at 849.903 kb on + strand, within Psyr_0748 at 849.903 kb on + strand, within Psyr_0748 at 849.903 kb on + strand, within Psyr_0748 at 849.904 kb on - strand, within Psyr_0748 at 849.911 kb on + strand, within Psyr_0748 at 849.911 kb on + strand, within Psyr_0748 at 849.911 kb on + strand, within Psyr_0748 at 849.912 kb on - strand, within Psyr_0748 at 849.912 kb on - strand, within Psyr_0748 at 849.912 kb on - strand, within Psyr_0748 at 849.959 kb on + strand, within Psyr_0748 at 849.959 kb on + strand, within Psyr_0748 at 849.960 kb on - strand, within Psyr_0748
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 847,675 + Psyr_0744 0.32 -0.2 847,675 + Psyr_0744 0.32 -0.8 847,675 + Psyr_0744 0.32 +0.4 847,726 + Psyr_0744 0.39 -0.2 847,726 + Psyr_0744 0.39 +3.5 847,726 + Psyr_0744 0.39 -2.9 847,726 + Psyr_0744 0.39 -0.0 847,727 - Psyr_0744 0.39 +1.7 847,727 - Psyr_0744 0.39 -0.1 847,727 - Psyr_0744 0.39 +0.8 847,727 - Psyr_0744 0.39 +0.3 847,727 - Psyr_0744 0.39 +0.0 847,809 + Psyr_0744 0.51 +0.8 847,810 - Psyr_0744 0.51 -1.2 847,810 - Psyr_0744 0.51 -0.8 847,810 - Psyr_0744 0.51 -1.8 847,810 - Psyr_0744 0.51 +0.4 848,084 + -3.9 848,084 + -0.4 848,084 + -0.1 848,084 + -0.8 848,088 + +0.5 848,088 + +1.8 848,088 + +0.4 848,101 + -1.0 848,102 - -2.4 848,133 - +1.4 848,153 + -2.6 848,153 + -0.2 848,153 + -0.2 848,153 + +1.9 848,153 + +0.3 848,153 + -2.3 848,153 + +0.6 848,153 + -0.4 848,153 + +0.5 848,153 + +0.8 848,153 + +1.5 848,154 - Psyr_0745 0.23 +1.5 848,154 - Psyr_0745 0.23 +0.3 848,154 - Psyr_0745 0.23 -0.8 848,154 - Psyr_0745 0.23 +1.0 848,154 - Psyr_0745 0.23 -1.5 848,154 - Psyr_0745 0.23 +0.5 848,154 - Psyr_0745 0.23 -1.6 848,154 - Psyr_0745 0.23 +0.1 848,187 - Psyr_0745 0.29 -0.1 848,501 + Psyr_0745 0.87 +0.3 848,502 - Psyr_0745 0.87 -0.6 848,502 - Psyr_0745 0.87 -1.3 848,502 - Psyr_0745 0.87 -0.4 848,502 - Psyr_0745 0.87 +0.2 848,540 - -0.5 848,661 + -0.2 848,661 + +0.5 848,685 + Psyr_0746 0.15 +0.2 848,686 - Psyr_0746 0.15 -1.3 848,689 - Psyr_0746 0.16 +0.2 848,738 + Psyr_0746 0.29 -0.4 848,738 + Psyr_0746 0.29 -0.4 848,739 - Psyr_0746 0.30 -0.6 848,848 + Psyr_0746 0.59 -1.7 848,849 - Psyr_0746 0.60 -0.7 849,023 + -0.4 849,024 - -0.1 849,024 - -0.6 849,024 - +0.2 849,024 - -0.1 849,079 + Psyr_0747 0.18 +0.3 849,079 + Psyr_0747 0.18 -2.2 849,079 + Psyr_0747 0.18 -0.8 849,080 - Psyr_0747 0.18 +0.0 849,184 - Psyr_0747 0.51 +0.0 849,204 + Psyr_0747 0.57 +0.9 849,204 + Psyr_0747 0.57 -0.5 849,204 + Psyr_0747 0.57 +0.2 849,205 - Psyr_0747 0.58 +0.5 849,205 - Psyr_0747 0.58 +1.5 849,205 - Psyr_0747 0.58 +2.0 849,269 + Psyr_0747 0.78 +2.3 849,276 + Psyr_0747 0.80 -1.4 849,276 + Psyr_0747 0.80 +1.9 849,276 + Psyr_0747 0.80 -2.1 849,276 + Psyr_0747 0.80 +0.3 849,276 + Psyr_0747 0.80 +0.4 849,276 + Psyr_0747 0.80 +0.3 849,276 + Psyr_0747 0.80 +0.2 849,276 + Psyr_0747 0.80 -1.6 849,277 - Psyr_0747 0.80 +1.0 849,277 - Psyr_0747 0.80 -0.3 849,277 - Psyr_0747 0.80 -0.4 849,277 - Psyr_0747 0.80 +0.9 849,277 - Psyr_0747 0.80 +0.7 849,277 - Psyr_0747 0.80 -0.5 849,277 - Psyr_0747 0.80 +0.6 849,277 - Psyr_0747 0.80 -0.5 849,277 - Psyr_0747 0.80 +0.2 849,277 - Psyr_0747 0.80 +0.7 849,277 - Psyr_0747 0.80 +0.8 849,310 - -0.2 849,324 - +1.1 849,361 + -0.1 849,362 - -0.1 849,362 - -0.0 849,387 - -0.7 849,390 + -0.8 849,390 + -0.8 849,390 + -0.6 849,391 - +5.1 849,399 + -2.1 849,399 + -0.0 849,399 + -0.9 849,403 - -0.8 849,403 - +0.6 849,428 + +0.2 849,428 + -1.5 849,428 + +0.5 849,429 - +0.1 849,429 - -0.8 849,429 - +0.4 849,432 + +0.2 849,432 + +0.2 849,432 + +0.5 849,433 - +2.2 849,433 - +1.8 849,453 + -2.2 849,532 - +0.6 849,534 + -0.6 849,534 + -0.2 849,535 - -0.4 849,621 + -1.9 849,622 - -1.7 849,622 - +1.3 849,622 - -0.0 849,680 + -0.2 849,689 + +0.3 849,690 - +2.4 849,744 + Psyr_0748 0.14 -0.3 849,744 + Psyr_0748 0.14 -0.0 849,744 + Psyr_0748 0.14 +0.0 849,744 + Psyr_0748 0.14 -0.2 849,744 + Psyr_0748 0.14 +2.2 849,745 - Psyr_0748 0.14 -1.2 849,745 - Psyr_0748 0.14 -0.9 849,745 - Psyr_0748 0.14 +2.8 849,745 - Psyr_0748 0.14 -1.6 849,745 - Psyr_0748 0.14 -1.4 849,758 + Psyr_0748 0.14 -0.2 849,814 - Psyr_0748 0.18 -2.4 849,868 + Psyr_0748 0.22 -1.5 849,868 + Psyr_0748 0.22 -0.5 849,869 - Psyr_0748 0.22 +0.7 849,903 + Psyr_0748 0.25 -1.0 849,903 + Psyr_0748 0.25 +1.2 849,903 + Psyr_0748 0.25 -1.1 849,904 - Psyr_0748 0.25 +1.1 849,911 + Psyr_0748 0.25 -0.8 849,911 + Psyr_0748 0.25 +0.2 849,911 + Psyr_0748 0.25 +1.0 849,912 - Psyr_0748 0.25 -0.3 849,912 - Psyr_0748 0.25 +0.3 849,912 - Psyr_0748 0.25 -2.2 849,959 + Psyr_0748 0.28 -0.4 849,959 + Psyr_0748 0.28 +0.5 849,960 - Psyr_0748 0.28 -1.0
Or see this region's nucleotide sequence