Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0699

Experiment: KB with Levodopa 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0697 and Psyr_0698 are separated by 33 nucleotidesPsyr_0698 and Psyr_0699 are separated by 6 nucleotidesPsyr_0699 and Psyr_0700 are separated by 146 nucleotides Psyr_0697: Psyr_0697 - tRNA 2-selenouridine synthase, at 801,532 to 802,632 _0697 Psyr_0698: Psyr_0698 - CDS, at 802,666 to 802,965 _0698 Psyr_0699: Psyr_0699 - CDS, at 802,972 to 803,430 _0699 Psyr_0700: Psyr_0700 - Trans-hexaprenyltranstransferase, at 803,577 to 804,545 _0700 Position (kb) 802 803 804Strain fitness (log2 ratio) -2 -1 0 1 2at 802.001 kb on + strand, within Psyr_0697at 802.001 kb on + strand, within Psyr_0697at 802.001 kb on + strand, within Psyr_0697at 802.002 kb on - strand, within Psyr_0697at 802.002 kb on - strand, within Psyr_0697at 802.002 kb on - strand, within Psyr_0697at 802.002 kb on - strand, within Psyr_0697at 802.294 kb on + strand, within Psyr_0697at 802.294 kb on + strand, within Psyr_0697at 802.294 kb on + strand, within Psyr_0697at 802.295 kb on - strand, within Psyr_0697at 802.295 kb on - strand, within Psyr_0697at 802.390 kb on - strand, within Psyr_0697at 802.390 kb on - strand, within Psyr_0697at 802.390 kb on - strand, within Psyr_0697at 802.390 kb on - strand, within Psyr_0697at 802.467 kb on + strand, within Psyr_0697at 802.519 kb on + strand, within Psyr_0697at 802.523 kb on - strandat 802.523 kb on - strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.541 kb on - strandat 802.603 kb on + strandat 802.630 kb on + strandat 802.630 kb on + strandat 802.687 kb on + strandat 802.688 kb on - strandat 802.688 kb on - strandat 802.963 kb on + strandat 802.963 kb on + strandat 802.963 kb on + strandat 802.963 kb on + strandat 802.964 kb on - strandat 802.964 kb on - strandat 803.158 kb on + strand, within Psyr_0699at 803.158 kb on + strand, within Psyr_0699at 803.158 kb on + strand, within Psyr_0699at 803.159 kb on - strand, within Psyr_0699at 803.159 kb on - strand, within Psyr_0699at 803.421 kb on - strandat 803.421 kb on - strandat 803.421 kb on - strandat 803.518 kb on - strandat 803.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM
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802,001 + Psyr_0697 0.43 -1.0
802,001 + Psyr_0697 0.43 -0.8
802,001 + Psyr_0697 0.43 +1.2
802,002 - Psyr_0697 0.43 +1.2
802,002 - Psyr_0697 0.43 +0.4
802,002 - Psyr_0697 0.43 -0.1
802,002 - Psyr_0697 0.43 +1.0
802,294 + Psyr_0697 0.69 -0.4
802,294 + Psyr_0697 0.69 +0.5
802,294 + Psyr_0697 0.69 -2.7
802,295 - Psyr_0697 0.69 -1.8
802,295 - Psyr_0697 0.69 -0.2
802,390 - Psyr_0697 0.78 +0.7
802,390 - Psyr_0697 0.78 -0.0
802,390 - Psyr_0697 0.78 +0.6
802,390 - Psyr_0697 0.78 -0.0
802,467 + Psyr_0697 0.85 -0.6
802,519 + Psyr_0697 0.90 +1.2
802,523 - -0.2
802,523 - -0.3
802,534 + +0.5
802,534 + +2.3
802,534 + +1.3
802,534 + +0.7
802,534 + -0.6
802,534 + -0.6
802,534 + -0.4
802,534 + -0.1
802,535 - +1.2
802,535 - +0.1
802,535 - -1.9
802,535 - +1.8
802,535 - -1.4
802,535 - -0.7
802,535 - -0.0
802,535 - +1.4
802,535 - -1.2
802,541 - -0.9
802,603 + +0.2
802,630 + -0.5
802,630 + +1.3
802,687 + -0.4
802,688 - -0.5
802,688 - -0.4
802,963 + +0.2
802,963 + -1.0
802,963 + +0.4
802,963 + +0.9
802,964 - -1.0
802,964 - -0.1
803,158 + Psyr_0699 0.41 +0.4
803,158 + Psyr_0699 0.41 -1.1
803,158 + Psyr_0699 0.41 -0.1
803,159 - Psyr_0699 0.41 -1.0
803,159 - Psyr_0699 0.41 -1.9
803,421 - -0.7
803,421 - -0.1
803,421 - -0.3
803,518 - -0.4
803,518 - -0.0

Or see this region's nucleotide sequence