Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21620 and ABZR87_RS21625 are separated by 142 nucleotides ABZR87_RS21625 and ABZR87_RS21630 are separated by 53 nucleotides
ABZR87_RS21620: ABZR87_RS21620 - Nramp family divalent metal transporter, at 1,230,877 to 1,232,196
_RS21620
ABZR87_RS21625: ABZR87_RS21625 - GGDEF domain-containing protein, at 1,232,339 to 1,233,439
_RS21625
ABZR87_RS21630: ABZR87_RS21630 - mechanosensitive ion channel family protein, at 1,233,493 to 1,234,626
_RS21630
Position (kb)
1232
1233
1234 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1231.423 kb on + strand, within ABZR87_RS21620 at 1231.423 kb on + strand, within ABZR87_RS21620 at 1231.424 kb on - strand, within ABZR87_RS21620 at 1231.424 kb on - strand, within ABZR87_RS21620 at 1231.424 kb on - strand, within ABZR87_RS21620 at 1231.519 kb on + strand, within ABZR87_RS21620 at 1231.519 kb on + strand, within ABZR87_RS21620 at 1231.519 kb on + strand, within ABZR87_RS21620 at 1231.519 kb on + strand, within ABZR87_RS21620 at 1231.519 kb on + strand, within ABZR87_RS21620 at 1231.519 kb on + strand, within ABZR87_RS21620 at 1231.520 kb on - strand, within ABZR87_RS21620 at 1231.520 kb on - strand, within ABZR87_RS21620 at 1231.520 kb on - strand, within ABZR87_RS21620 at 1231.520 kb on - strand, within ABZR87_RS21620 at 1231.567 kb on + strand, within ABZR87_RS21620 at 1231.567 kb on + strand, within ABZR87_RS21620 at 1231.567 kb on + strand, within ABZR87_RS21620 at 1231.766 kb on - strand, within ABZR87_RS21620 at 1231.766 kb on - strand, within ABZR87_RS21620 at 1231.766 kb on - strand, within ABZR87_RS21620 at 1231.854 kb on + strand, within ABZR87_RS21620 at 1232.165 kb on + strand at 1232.165 kb on + strand at 1232.165 kb on + strand at 1232.165 kb on + strand at 1232.165 kb on + strand at 1232.165 kb on + strand at 1232.166 kb on - strand at 1232.166 kb on - strand at 1232.166 kb on - strand at 1232.166 kb on - strand at 1232.166 kb on - strand at 1232.166 kb on - strand at 1232.166 kb on - strand at 1232.174 kb on + strand at 1232.175 kb on - strand at 1232.399 kb on + strand at 1232.399 kb on + strand at 1232.400 kb on - strand at 1232.681 kb on + strand, within ABZR87_RS21625 at 1232.681 kb on + strand, within ABZR87_RS21625 at 1232.681 kb on + strand, within ABZR87_RS21625 at 1232.681 kb on + strand, within ABZR87_RS21625 at 1232.681 kb on + strand, within ABZR87_RS21625 at 1232.681 kb on + strand, within ABZR87_RS21625 at 1232.681 kb on + strand, within ABZR87_RS21625 at 1232.682 kb on - strand, within ABZR87_RS21625 at 1232.682 kb on - strand, within ABZR87_RS21625 at 1232.682 kb on - strand, within ABZR87_RS21625 at 1232.834 kb on + strand, within ABZR87_RS21625 at 1232.835 kb on - strand, within ABZR87_RS21625 at 1232.877 kb on - strand, within ABZR87_RS21625 at 1233.042 kb on - strand, within ABZR87_RS21625 at 1233.076 kb on + strand, within ABZR87_RS21625 at 1233.076 kb on + strand, within ABZR87_RS21625 at 1233.077 kb on - strand, within ABZR87_RS21625 at 1233.077 kb on - strand, within ABZR87_RS21625 at 1233.077 kb on - strand, within ABZR87_RS21625 at 1233.077 kb on - strand, within ABZR87_RS21625 at 1233.077 kb on - strand, within ABZR87_RS21625 at 1233.400 kb on - strand at 1233.451 kb on + strand at 1233.451 kb on + strand at 1233.451 kb on + strand at 1233.451 kb on + strand at 1233.451 kb on + strand at 1233.452 kb on - strand at 1233.452 kb on - strand at 1233.452 kb on - strand at 1233.553 kb on - strand at 1233.553 kb on - strand at 1233.553 kb on - strand at 1233.575 kb on - strand at 1233.575 kb on - strand at 1233.575 kb on - strand at 1233.681 kb on + strand, within ABZR87_RS21630 at 1233.681 kb on + strand, within ABZR87_RS21630 at 1233.727 kb on + strand, within ABZR87_RS21630 at 1233.727 kb on + strand, within ABZR87_RS21630 at 1233.728 kb on - strand, within ABZR87_RS21630 at 1233.962 kb on + strand, within ABZR87_RS21630 at 1234.270 kb on + strand, within ABZR87_RS21630 at 1234.270 kb on + strand, within ABZR87_RS21630 at 1234.270 kb on + strand, within ABZR87_RS21630 at 1234.270 kb on + strand, within ABZR87_RS21630 at 1234.435 kb on + strand, within ABZR87_RS21630 at 1234.435 kb on + strand, within ABZR87_RS21630 at 1234.435 kb on + strand, within ABZR87_RS21630 at 1234.435 kb on + strand, within ABZR87_RS21630 at 1234.435 kb on + strand, within ABZR87_RS21630
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 1,231,423 + ABZR87_RS21620 0.41 +0.8 1,231,423 + ABZR87_RS21620 0.41 -1.4 1,231,424 - ABZR87_RS21620 0.41 +0.1 1,231,424 - ABZR87_RS21620 0.41 -0.5 1,231,424 - ABZR87_RS21620 0.41 -1.2 1,231,519 + ABZR87_RS21620 0.49 -0.6 1,231,519 + ABZR87_RS21620 0.49 +0.5 1,231,519 + ABZR87_RS21620 0.49 -1.4 1,231,519 + ABZR87_RS21620 0.49 +0.4 1,231,519 + ABZR87_RS21620 0.49 -0.7 1,231,519 + ABZR87_RS21620 0.49 +0.7 1,231,520 - ABZR87_RS21620 0.49 +0.4 1,231,520 - ABZR87_RS21620 0.49 +1.0 1,231,520 - ABZR87_RS21620 0.49 +0.4 1,231,520 - ABZR87_RS21620 0.49 -0.3 1,231,567 + ABZR87_RS21620 0.52 +1.5 1,231,567 + ABZR87_RS21620 0.52 -0.6 1,231,567 + ABZR87_RS21620 0.52 -0.3 1,231,766 - ABZR87_RS21620 0.67 +0.8 1,231,766 - ABZR87_RS21620 0.67 +1.0 1,231,766 - ABZR87_RS21620 0.67 -1.0 1,231,854 + ABZR87_RS21620 0.74 -0.2 1,232,165 + -1.8 1,232,165 + +0.1 1,232,165 + -0.4 1,232,165 + -0.1 1,232,165 + -0.3 1,232,165 + +0.9 1,232,166 - +0.6 1,232,166 - -0.5 1,232,166 - -0.1 1,232,166 - +0.6 1,232,166 - +0.3 1,232,166 - +0.2 1,232,166 - +0.2 1,232,174 + +0.6 1,232,175 - +0.5 1,232,399 + +0.4 1,232,399 + -0.0 1,232,400 - +0.4 1,232,681 + ABZR87_RS21625 0.31 +0.0 1,232,681 + ABZR87_RS21625 0.31 +2.6 1,232,681 + ABZR87_RS21625 0.31 -0.4 1,232,681 + ABZR87_RS21625 0.31 +0.0 1,232,681 + ABZR87_RS21625 0.31 -0.4 1,232,681 + ABZR87_RS21625 0.31 -0.6 1,232,681 + ABZR87_RS21625 0.31 -0.1 1,232,682 - ABZR87_RS21625 0.31 -0.2 1,232,682 - ABZR87_RS21625 0.31 +0.9 1,232,682 - ABZR87_RS21625 0.31 +0.4 1,232,834 + ABZR87_RS21625 0.45 +0.4 1,232,835 - ABZR87_RS21625 0.45 -0.4 1,232,877 - ABZR87_RS21625 0.49 +1.1 1,233,042 - ABZR87_RS21625 0.64 +0.2 1,233,076 + ABZR87_RS21625 0.67 -1.0 1,233,076 + ABZR87_RS21625 0.67 -1.1 1,233,077 - ABZR87_RS21625 0.67 +0.1 1,233,077 - ABZR87_RS21625 0.67 +0.4 1,233,077 - ABZR87_RS21625 0.67 +0.1 1,233,077 - ABZR87_RS21625 0.67 +2.6 1,233,077 - ABZR87_RS21625 0.67 +0.7 1,233,400 - +0.4 1,233,451 + -0.4 1,233,451 + +3.6 1,233,451 + +0.1 1,233,451 + +1.8 1,233,451 + -0.6 1,233,452 - +0.2 1,233,452 - +0.7 1,233,452 - +0.4 1,233,553 - -0.4 1,233,553 - -2.1 1,233,553 - -1.0 1,233,575 - -0.2 1,233,575 - +0.8 1,233,575 - +0.0 1,233,681 + ABZR87_RS21630 0.17 +0.7 1,233,681 + ABZR87_RS21630 0.17 -0.0 1,233,727 + ABZR87_RS21630 0.21 +0.5 1,233,727 + ABZR87_RS21630 0.21 -0.6 1,233,728 - ABZR87_RS21630 0.21 -0.1 1,233,962 + ABZR87_RS21630 0.41 +1.0 1,234,270 + ABZR87_RS21630 0.69 +0.3 1,234,270 + ABZR87_RS21630 0.69 +1.0 1,234,270 + ABZR87_RS21630 0.69 -2.4 1,234,270 + ABZR87_RS21630 0.69 -0.1 1,234,435 + ABZR87_RS21630 0.83 +0.7 1,234,435 + ABZR87_RS21630 0.83 +0.2 1,234,435 + ABZR87_RS21630 0.83 -0.6 1,234,435 + ABZR87_RS21630 0.83 -0.3 1,234,435 + ABZR87_RS21630 0.83 +0.5
Or see this region's nucleotide sequence