Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17490

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17485 and ABZR87_RS17490 are separated by 361 nucleotidesABZR87_RS17490 and ABZR87_RS17495 are separated by 27 nucleotides ABZR87_RS17485: ABZR87_RS17485 - enoyl-CoA hydratase/isomerase family protein, at 282,274 to 283,425 _RS17485 ABZR87_RS17490: ABZR87_RS17490 - phospholipase D-like domain-containing protein, at 283,787 to 285,556 _RS17490 ABZR87_RS17495: ABZR87_RS17495 - acyl-CoA synthetase, at 285,584 to 287,077 _RS17495 Position (kb) 283 284 285 286Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 282.811 kb on + strand, within ABZR87_RS17485at 282.811 kb on + strand, within ABZR87_RS17485at 282.811 kb on + strand, within ABZR87_RS17485at 282.811 kb on + strand, within ABZR87_RS17485at 282.812 kb on - strand, within ABZR87_RS17485at 282.812 kb on - strand, within ABZR87_RS17485at 282.812 kb on - strand, within ABZR87_RS17485at 283.034 kb on - strand, within ABZR87_RS17485at 283.034 kb on - strand, within ABZR87_RS17485at 283.034 kb on - strand, within ABZR87_RS17485at 283.493 kb on + strandat 283.493 kb on + strandat 283.493 kb on + strandat 283.494 kb on - strandat 283.494 kb on - strandat 283.494 kb on - strandat 283.527 kb on + strandat 283.527 kb on + strandat 283.527 kb on + strandat 283.527 kb on + strandat 283.527 kb on + strandat 283.528 kb on - strandat 283.528 kb on - strandat 283.528 kb on - strandat 283.533 kb on + strandat 283.533 kb on + strandat 283.538 kb on + strandat 283.538 kb on + strandat 283.539 kb on - strandat 283.539 kb on - strandat 283.578 kb on - strandat 283.628 kb on - strandat 283.751 kb on - strandat 283.751 kb on - strandat 283.751 kb on - strandat 283.823 kb on + strandat 283.823 kb on + strandat 283.823 kb on + strandat 283.824 kb on - strandat 283.824 kb on - strandat 283.824 kb on - strandat 283.824 kb on - strandat 283.998 kb on - strand, within ABZR87_RS17490at 284.075 kb on + strand, within ABZR87_RS17490at 284.075 kb on + strand, within ABZR87_RS17490at 284.075 kb on + strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.093 kb on + strand, within ABZR87_RS17490at 284.204 kb on + strand, within ABZR87_RS17490at 284.205 kb on - strand, within ABZR87_RS17490at 284.205 kb on - strand, within ABZR87_RS17490at 284.205 kb on - strand, within ABZR87_RS17490at 284.295 kb on - strand, within ABZR87_RS17490at 284.309 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.322 kb on - strand, within ABZR87_RS17490at 284.322 kb on - strand, within ABZR87_RS17490at 284.322 kb on - strand, within ABZR87_RS17490at 284.322 kb on - strand, within ABZR87_RS17490at 284.328 kb on - strand, within ABZR87_RS17490at 284.393 kb on + strand, within ABZR87_RS17490at 284.414 kb on + strand, within ABZR87_RS17490at 284.414 kb on + strand, within ABZR87_RS17490at 284.414 kb on + strand, within ABZR87_RS17490at 284.415 kb on - strand, within ABZR87_RS17490at 284.499 kb on - strand, within ABZR87_RS17490at 284.499 kb on - strand, within ABZR87_RS17490at 284.499 kb on - strand, within ABZR87_RS17490at 284.499 kb on - strand, within ABZR87_RS17490at 284.568 kb on - strand, within ABZR87_RS17490at 284.568 kb on - strand, within ABZR87_RS17490at 284.708 kb on + strand, within ABZR87_RS17490at 284.708 kb on + strand, within ABZR87_RS17490at 284.708 kb on + strand, within ABZR87_RS17490at 284.708 kb on + strand, within ABZR87_RS17490at 284.709 kb on - strand, within ABZR87_RS17490at 284.709 kb on - strand, within ABZR87_RS17490at 284.759 kb on + strand, within ABZR87_RS17490at 284.759 kb on + strand, within ABZR87_RS17490at 284.759 kb on + strand, within ABZR87_RS17490at 284.760 kb on - strand, within ABZR87_RS17490at 284.760 kb on - strand, within ABZR87_RS17490at 284.893 kb on + strand, within ABZR87_RS17490at 284.986 kb on - strand, within ABZR87_RS17490at 285.335 kb on + strand, within ABZR87_RS17490at 285.336 kb on - strand, within ABZR87_RS17490at 285.336 kb on - strand, within ABZR87_RS17490at 285.360 kb on - strand, within ABZR87_RS17490at 285.476 kb on + strandat 285.585 kb on + strandat 285.585 kb on + strandat 285.586 kb on - strandat 285.586 kb on - strandat 285.588 kb on - strandat 285.793 kb on - strand, within ABZR87_RS17495at 285.793 kb on - strand, within ABZR87_RS17495at 285.873 kb on + strand, within ABZR87_RS17495at 285.924 kb on + strand, within ABZR87_RS17495at 285.924 kb on + strand, within ABZR87_RS17495at 285.924 kb on + strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.051 kb on - strand, within ABZR87_RS17495at 286.051 kb on - strand, within ABZR87_RS17495at 286.051 kb on - strand, within ABZR87_RS17495at 286.203 kb on + strand, within ABZR87_RS17495at 286.203 kb on + strand, within ABZR87_RS17495at 286.203 kb on + strand, within ABZR87_RS17495at 286.203 kb on + strand, within ABZR87_RS17495at 286.204 kb on - strand, within ABZR87_RS17495at 286.212 kb on + strand, within ABZR87_RS17495at 286.213 kb on - strand, within ABZR87_RS17495at 286.213 kb on - strand, within ABZR87_RS17495at 286.213 kb on - strand, within ABZR87_RS17495at 286.213 kb on - strand, within ABZR87_RS17495at 286.308 kb on + strand, within ABZR87_RS17495at 286.309 kb on - strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.368 kb on + strand, within ABZR87_RS17495at 286.375 kb on + strand, within ABZR87_RS17495at 286.495 kb on - strand, within ABZR87_RS17495

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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282,811 + ABZR87_RS17485 0.47 +1.2
282,811 + ABZR87_RS17485 0.47 +0.1
282,811 + ABZR87_RS17485 0.47 +0.8
282,811 + ABZR87_RS17485 0.47 -0.8
282,812 - ABZR87_RS17485 0.47 -0.1
282,812 - ABZR87_RS17485 0.47 -0.0
282,812 - ABZR87_RS17485 0.47 -0.4
283,034 - ABZR87_RS17485 0.66 +0.3
283,034 - ABZR87_RS17485 0.66 +0.2
283,034 - ABZR87_RS17485 0.66 -1.0
283,493 + -0.4
283,493 + -0.6
283,493 + -1.2
283,494 - -0.4
283,494 - +0.3
283,494 - +0.5
283,527 + +0.6
283,527 + +0.2
283,527 + -0.1
283,527 + -0.1
283,527 + -2.0
283,528 - +1.0
283,528 - +0.4
283,528 - -1.3
283,533 + -0.1
283,533 + -0.8
283,538 + -0.4
283,538 + -0.9
283,539 - +1.0
283,539 - -0.1
283,578 - -1.3
283,628 - +0.1
283,751 - -1.2
283,751 - +0.4
283,751 - +0.4
283,823 + +1.0
283,823 + -0.2
283,823 + -0.4
283,824 - -0.4
283,824 - +1.1
283,824 - -0.2
283,824 - -0.2
283,998 - ABZR87_RS17490 0.12 -0.8
284,075 + ABZR87_RS17490 0.16 +0.4
284,075 + ABZR87_RS17490 0.16 +0.1
284,075 + ABZR87_RS17490 0.16 -0.7
284,076 - ABZR87_RS17490 0.16 +0.9
284,076 - ABZR87_RS17490 0.16 +0.5
284,076 - ABZR87_RS17490 0.16 -0.2
284,076 - ABZR87_RS17490 0.16 -1.7
284,076 - ABZR87_RS17490 0.16 -0.4
284,093 + ABZR87_RS17490 0.17 +0.8
284,204 + ABZR87_RS17490 0.24 -1.0
284,205 - ABZR87_RS17490 0.24 +0.7
284,205 - ABZR87_RS17490 0.24 -0.5
284,205 - ABZR87_RS17490 0.24 -0.0
284,295 - ABZR87_RS17490 0.29 -0.8
284,309 + ABZR87_RS17490 0.29 -1.5
284,321 + ABZR87_RS17490 0.30 -0.3
284,321 + ABZR87_RS17490 0.30 +0.3
284,321 + ABZR87_RS17490 0.30 +1.0
284,321 + ABZR87_RS17490 0.30 +0.2
284,321 + ABZR87_RS17490 0.30 -0.1
284,322 - ABZR87_RS17490 0.30 +1.0
284,322 - ABZR87_RS17490 0.30 +0.6
284,322 - ABZR87_RS17490 0.30 -0.2
284,322 - ABZR87_RS17490 0.30 +0.3
284,328 - ABZR87_RS17490 0.31 +0.4
284,393 + ABZR87_RS17490 0.34 +0.4
284,414 + ABZR87_RS17490 0.35 +0.8
284,414 + ABZR87_RS17490 0.35 +0.6
284,414 + ABZR87_RS17490 0.35 +0.4
284,415 - ABZR87_RS17490 0.35 -0.2
284,499 - ABZR87_RS17490 0.40 -0.6
284,499 - ABZR87_RS17490 0.40 -0.3
284,499 - ABZR87_RS17490 0.40 -0.5
284,499 - ABZR87_RS17490 0.40 -0.6
284,568 - ABZR87_RS17490 0.44 +0.2
284,568 - ABZR87_RS17490 0.44 -1.6
284,708 + ABZR87_RS17490 0.52 -0.6
284,708 + ABZR87_RS17490 0.52 +0.6
284,708 + ABZR87_RS17490 0.52 +0.9
284,708 + ABZR87_RS17490 0.52 -0.5
284,709 - ABZR87_RS17490 0.52 -1.5
284,709 - ABZR87_RS17490 0.52 +1.2
284,759 + ABZR87_RS17490 0.55 +0.1
284,759 + ABZR87_RS17490 0.55 -0.8
284,759 + ABZR87_RS17490 0.55 -0.5
284,760 - ABZR87_RS17490 0.55 +0.1
284,760 - ABZR87_RS17490 0.55 -0.0
284,893 + ABZR87_RS17490 0.62 -0.3
284,986 - ABZR87_RS17490 0.68 -0.2
285,335 + ABZR87_RS17490 0.87 +0.8
285,336 - ABZR87_RS17490 0.88 -0.0
285,336 - ABZR87_RS17490 0.88 -0.1
285,360 - ABZR87_RS17490 0.89 +0.6
285,476 + -2.9
285,585 + +0.7
285,585 + -0.1
285,586 - +1.9
285,586 - +0.5
285,588 - -2.0
285,793 - ABZR87_RS17495 0.14 -1.7
285,793 - ABZR87_RS17495 0.14 -0.7
285,873 + ABZR87_RS17495 0.19 -2.5
285,924 + ABZR87_RS17495 0.23 -3.1
285,924 + ABZR87_RS17495 0.23 -1.5
285,924 + ABZR87_RS17495 0.23 -1.1
285,925 - ABZR87_RS17495 0.23 -0.3
285,925 - ABZR87_RS17495 0.23 -2.5
285,925 - ABZR87_RS17495 0.23 -4.1
285,925 - ABZR87_RS17495 0.23 -2.6
285,925 - ABZR87_RS17495 0.23 -2.0
285,925 - ABZR87_RS17495 0.23 -3.3
286,050 + ABZR87_RS17495 0.31 -2.1
286,050 + ABZR87_RS17495 0.31 -2.1
286,050 + ABZR87_RS17495 0.31 -1.9
286,050 + ABZR87_RS17495 0.31 -0.9
286,050 + ABZR87_RS17495 0.31 -2.3
286,051 - ABZR87_RS17495 0.31 -2.5
286,051 - ABZR87_RS17495 0.31 -2.1
286,051 - ABZR87_RS17495 0.31 -0.8
286,203 + ABZR87_RS17495 0.41 -4.6
286,203 + ABZR87_RS17495 0.41 -0.9
286,203 + ABZR87_RS17495 0.41 -1.5
286,203 + ABZR87_RS17495 0.41 -0.8
286,204 - ABZR87_RS17495 0.41 -2.3
286,212 + ABZR87_RS17495 0.42 -1.9
286,213 - ABZR87_RS17495 0.42 -3.2
286,213 - ABZR87_RS17495 0.42 -0.9
286,213 - ABZR87_RS17495 0.42 -2.3
286,213 - ABZR87_RS17495 0.42 -0.8
286,308 + ABZR87_RS17495 0.48 -3.3
286,309 - ABZR87_RS17495 0.49 -1.1
286,350 + ABZR87_RS17495 0.51 -1.0
286,350 + ABZR87_RS17495 0.51 -2.8
286,350 + ABZR87_RS17495 0.51 -1.5
286,350 + ABZR87_RS17495 0.51 -4.6
286,350 + ABZR87_RS17495 0.51 -2.6
286,350 + ABZR87_RS17495 0.51 -1.9
286,350 + ABZR87_RS17495 0.51 -2.7
286,351 - ABZR87_RS17495 0.51 -1.0
286,351 - ABZR87_RS17495 0.51 -2.0
286,351 - ABZR87_RS17495 0.51 -2.0
286,351 - ABZR87_RS17495 0.51 -3.0
286,351 - ABZR87_RS17495 0.51 -1.8
286,351 - ABZR87_RS17495 0.51 -0.9
286,368 + ABZR87_RS17495 0.52 -1.9
286,375 + ABZR87_RS17495 0.53 -3.0
286,495 - ABZR87_RS17495 0.61 -2.3

Or see this region's nucleotide sequence