Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17190

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17185 and ABZR87_RS17190 are separated by 55 nucleotidesABZR87_RS17190 and ABZR87_RS17195 are separated by 135 nucleotides ABZR87_RS17185: ABZR87_RS17185 - amidohydrolase, at 200,871 to 201,791 _RS17185 ABZR87_RS17190: ABZR87_RS17190 - MFS transporter, at 201,847 to 203,094 _RS17190 ABZR87_RS17195: ABZR87_RS17195 - malto-oligosyltrehalose synthase, at 203,230 to 206,070 _RS17195 Position (kb) 201 202 203 204Strain fitness (log2 ratio) -2 -1 0 1 2 3at 200.861 kb on + strandat 200.861 kb on + strandat 200.861 kb on + strandat 200.861 kb on + strandat 200.861 kb on + strandat 200.861 kb on + strandat 200.862 kb on - strandat 200.862 kb on - strandat 200.862 kb on - strandat 200.862 kb on - strandat 200.971 kb on + strand, within ABZR87_RS17185at 200.971 kb on + strand, within ABZR87_RS17185at 201.499 kb on + strand, within ABZR87_RS17185at 201.500 kb on - strand, within ABZR87_RS17185at 201.500 kb on - strand, within ABZR87_RS17185at 201.500 kb on - strand, within ABZR87_RS17185at 201.598 kb on + strand, within ABZR87_RS17185at 201.598 kb on + strand, within ABZR87_RS17185at 201.598 kb on + strand, within ABZR87_RS17185at 201.598 kb on + strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.648 kb on + strand, within ABZR87_RS17185at 201.648 kb on + strand, within ABZR87_RS17185at 201.649 kb on - strand, within ABZR87_RS17185at 201.747 kb on + strandat 201.747 kb on + strandat 201.747 kb on + strandat 201.747 kb on + strandat 201.747 kb on + strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.920 kb on + strandat 202.026 kb on - strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.173 kb on - strand, within ABZR87_RS17190at 202.173 kb on - strand, within ABZR87_RS17190at 202.173 kb on - strand, within ABZR87_RS17190at 202.173 kb on - strand, within ABZR87_RS17190at 202.181 kb on - strand, within ABZR87_RS17190at 202.343 kb on + strand, within ABZR87_RS17190at 202.344 kb on - strand, within ABZR87_RS17190at 202.370 kb on + strand, within ABZR87_RS17190at 202.370 kb on + strand, within ABZR87_RS17190at 202.370 kb on + strand, within ABZR87_RS17190at 202.371 kb on - strand, within ABZR87_RS17190at 202.374 kb on - strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.536 kb on - strand, within ABZR87_RS17190at 202.536 kb on - strand, within ABZR87_RS17190at 202.536 kb on - strand, within ABZR87_RS17190at 202.610 kb on + strand, within ABZR87_RS17190at 202.610 kb on + strand, within ABZR87_RS17190at 202.611 kb on - strand, within ABZR87_RS17190at 202.622 kb on + strand, within ABZR87_RS17190at 202.622 kb on + strand, within ABZR87_RS17190at 202.623 kb on - strand, within ABZR87_RS17190at 202.854 kb on + strand, within ABZR87_RS17190at 202.854 kb on + strand, within ABZR87_RS17190at 202.854 kb on + strand, within ABZR87_RS17190at 202.854 kb on + strand, within ABZR87_RS17190at 203.152 kb on - strandat 203.235 kb on + strandat 203.235 kb on + strandat 203.235 kb on + strandat 203.235 kb on + strandat 203.235 kb on + strandat 203.236 kb on - strandat 203.236 kb on - strandat 203.236 kb on - strandat 203.236 kb on - strandat 203.236 kb on - strandat 203.236 kb on - strandat 203.319 kb on + strandat 203.319 kb on + strandat 203.320 kb on - strandat 203.467 kb on - strandat 203.522 kb on + strand, within ABZR87_RS17195at 203.522 kb on + strand, within ABZR87_RS17195at 203.523 kb on - strand, within ABZR87_RS17195at 203.684 kb on + strand, within ABZR87_RS17195at 203.684 kb on + strand, within ABZR87_RS17195at 203.747 kb on + strand, within ABZR87_RS17195at 203.747 kb on + strand, within ABZR87_RS17195at 203.915 kb on + strand, within ABZR87_RS17195at 203.915 kb on + strand, within ABZR87_RS17195at 203.916 kb on - strand, within ABZR87_RS17195at 204.066 kb on - strand, within ABZR87_RS17195

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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200,861 + -0.0
200,861 + +1.1
200,861 + +0.5
200,861 + -1.0
200,861 + +0.1
200,861 + +1.3
200,862 - -0.4
200,862 - -0.3
200,862 - +1.6
200,862 - -2.2
200,971 + ABZR87_RS17185 0.11 +1.2
200,971 + ABZR87_RS17185 0.11 -1.5
201,499 + ABZR87_RS17185 0.68 +0.1
201,500 - ABZR87_RS17185 0.68 -1.7
201,500 - ABZR87_RS17185 0.68 +0.5
201,500 - ABZR87_RS17185 0.68 -1.2
201,598 + ABZR87_RS17185 0.79 -0.5
201,598 + ABZR87_RS17185 0.79 -1.4
201,598 + ABZR87_RS17185 0.79 -1.6
201,598 + ABZR87_RS17185 0.79 +0.5
201,599 - ABZR87_RS17185 0.79 +0.0
201,599 - ABZR87_RS17185 0.79 -0.6
201,599 - ABZR87_RS17185 0.79 -2.0
201,599 - ABZR87_RS17185 0.79 -2.2
201,599 - ABZR87_RS17185 0.79 -1.1
201,648 + ABZR87_RS17185 0.84 -1.8
201,648 + ABZR87_RS17185 0.84 -0.8
201,649 - ABZR87_RS17185 0.84 -0.1
201,747 + -0.4
201,747 + -1.7
201,747 + +0.0
201,747 + +0.6
201,747 + -0.0
201,748 - -2.1
201,748 - +0.4
201,748 - +0.2
201,748 - -0.5
201,748 - +0.9
201,748 - -1.2
201,920 + +1.7
202,026 - ABZR87_RS17190 0.14 -0.2
202,172 + ABZR87_RS17190 0.26 +0.4
202,172 + ABZR87_RS17190 0.26 -0.2
202,172 + ABZR87_RS17190 0.26 +0.2
202,172 + ABZR87_RS17190 0.26 +0.4
202,172 + ABZR87_RS17190 0.26 +0.4
202,173 - ABZR87_RS17190 0.26 -0.2
202,173 - ABZR87_RS17190 0.26 -0.3
202,173 - ABZR87_RS17190 0.26 +1.5
202,173 - ABZR87_RS17190 0.26 +0.2
202,181 - ABZR87_RS17190 0.27 -0.6
202,343 + ABZR87_RS17190 0.40 +0.8
202,344 - ABZR87_RS17190 0.40 +0.5
202,370 + ABZR87_RS17190 0.42 -0.9
202,370 + ABZR87_RS17190 0.42 +0.2
202,370 + ABZR87_RS17190 0.42 -1.0
202,371 - ABZR87_RS17190 0.42 +0.1
202,374 - ABZR87_RS17190 0.42 -0.6
202,535 + ABZR87_RS17190 0.55 -0.3
202,535 + ABZR87_RS17190 0.55 -1.3
202,535 + ABZR87_RS17190 0.55 +1.1
202,535 + ABZR87_RS17190 0.55 -0.6
202,535 + ABZR87_RS17190 0.55 +0.5
202,535 + ABZR87_RS17190 0.55 -0.4
202,535 + ABZR87_RS17190 0.55 -0.7
202,535 + ABZR87_RS17190 0.55 -0.1
202,535 + ABZR87_RS17190 0.55 +1.1
202,535 + ABZR87_RS17190 0.55 -2.0
202,535 + ABZR87_RS17190 0.55 -1.0
202,535 + ABZR87_RS17190 0.55 +0.6
202,535 + ABZR87_RS17190 0.55 +0.8
202,535 + ABZR87_RS17190 0.55 -1.2
202,536 - ABZR87_RS17190 0.55 +0.1
202,536 - ABZR87_RS17190 0.55 -1.3
202,536 - ABZR87_RS17190 0.55 -0.6
202,610 + ABZR87_RS17190 0.61 -0.8
202,610 + ABZR87_RS17190 0.61 +2.3
202,611 - ABZR87_RS17190 0.61 -0.6
202,622 + ABZR87_RS17190 0.62 +0.1
202,622 + ABZR87_RS17190 0.62 -2.0
202,623 - ABZR87_RS17190 0.62 -0.1
202,854 + ABZR87_RS17190 0.81 -1.7
202,854 + ABZR87_RS17190 0.81 -0.5
202,854 + ABZR87_RS17190 0.81 +0.6
202,854 + ABZR87_RS17190 0.81 +0.4
203,152 - +0.9
203,235 + -0.6
203,235 + -0.7
203,235 + -0.6
203,235 + -0.8
203,235 + -0.8
203,236 - -0.4
203,236 - +2.8
203,236 - +1.1
203,236 - -1.4
203,236 - +0.6
203,236 - -0.3
203,319 + +0.3
203,319 + +1.0
203,320 - +1.3
203,467 - +0.6
203,522 + ABZR87_RS17195 0.10 -0.5
203,522 + ABZR87_RS17195 0.10 -1.2
203,523 - ABZR87_RS17195 0.10 +0.3
203,684 + ABZR87_RS17195 0.16 -0.7
203,684 + ABZR87_RS17195 0.16 +0.3
203,747 + ABZR87_RS17195 0.18 -0.9
203,747 + ABZR87_RS17195 0.18 +0.5
203,915 + ABZR87_RS17195 0.24 -1.2
203,915 + ABZR87_RS17195 0.24 -0.1
203,916 - ABZR87_RS17195 0.24 -1.0
204,066 - ABZR87_RS17195 0.29 -0.6

Or see this region's nucleotide sequence