Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16280

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16275 and ABZR87_RS16280 overlap by 4 nucleotidesABZR87_RS16280 and ABZR87_RS16285 are separated by 318 nucleotides ABZR87_RS16275: ABZR87_RS16275 - ParA family protein, at 1,775 to 2,443 _RS16275 ABZR87_RS16280: ABZR87_RS16280 - ParB/RepB/Spo0J family partition protein, at 2,440 to 3,450 _RS16280 ABZR87_RS16285: ABZR87_RS16285 - hypothetical protein, at 3,769 to 4,587 _RS16285 Position (kb) 2 3 4Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1.445 kb on + strandat 1.445 kb on + strandat 1.470 kb on + strandat 1.471 kb on - strandat 1.471 kb on - strandat 1.471 kb on - strandat 1.534 kb on - strandat 1.534 kb on - strandat 1.548 kb on + strandat 1.549 kb on - strandat 1.556 kb on + strandat 1.556 kb on + strandat 1.556 kb on + strandat 1.556 kb on + strandat 1.567 kb on + strandat 1.567 kb on + strandat 1.567 kb on + strandat 1.567 kb on + strandat 1.567 kb on + strandat 1.568 kb on - strandat 1.568 kb on - strandat 1.568 kb on - strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.593 kb on + strandat 1.593 kb on + strandat 1.594 kb on - strandat 1.594 kb on - strandat 1.594 kb on - strandat 1.613 kb on + strandat 1.614 kb on - strandat 1.687 kb on - strandat 1.687 kb on - strandat 1.700 kb on + strandat 1.701 kb on - strandat 3.443 kb on + strandat 3.443 kb on + strandat 3.444 kb on - strandat 3.448 kb on + strandat 3.448 kb on + strandat 3.448 kb on + strandat 3.448 kb on + strandat 3.448 kb on + strandat 3.448 kb on + strandat 3.449 kb on - strandat 3.449 kb on - strandat 3.449 kb on - strandat 3.449 kb on - strandat 3.578 kb on - strandat 3.667 kb on - strandat 3.669 kb on + strandat 3.683 kb on - strandat 3.840 kb on + strandat 3.916 kb on + strand, within ABZR87_RS16285at 3.916 kb on + strand, within ABZR87_RS16285at 3.917 kb on - strand, within ABZR87_RS16285at 3.931 kb on + strand, within ABZR87_RS16285at 3.931 kb on + strand, within ABZR87_RS16285at 3.931 kb on + strand, within ABZR87_RS16285at 3.931 kb on + strand, within ABZR87_RS16285at 3.931 kb on + strand, within ABZR87_RS16285at 3.931 kb on + strand, within ABZR87_RS16285at 3.931 kb on + strand, within ABZR87_RS16285at 3.932 kb on - strand, within ABZR87_RS16285at 3.932 kb on - strand, within ABZR87_RS16285at 3.932 kb on - strand, within ABZR87_RS16285at 3.959 kb on + strand, within ABZR87_RS16285at 3.978 kb on + strand, within ABZR87_RS16285at 3.978 kb on + strand, within ABZR87_RS16285at 3.978 kb on + strand, within ABZR87_RS16285at 3.979 kb on - strand, within ABZR87_RS16285at 4.032 kb on + strand, within ABZR87_RS16285at 4.033 kb on - strand, within ABZR87_RS16285at 4.116 kb on + strand, within ABZR87_RS16285at 4.116 kb on + strand, within ABZR87_RS16285at 4.116 kb on + strand, within ABZR87_RS16285at 4.116 kb on + strand, within ABZR87_RS16285at 4.116 kb on + strand, within ABZR87_RS16285at 4.117 kb on - strand, within ABZR87_RS16285at 4.117 kb on - strand, within ABZR87_RS16285at 4.117 kb on - strand, within ABZR87_RS16285at 4.117 kb on - strand, within ABZR87_RS16285

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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1,445 + -1.4
1,445 + -1.0
1,470 + -0.7
1,471 - -0.7
1,471 - +0.1
1,471 - -4.3
1,534 - +0.1
1,534 - -0.7
1,548 + -1.3
1,549 - +0.1
1,556 + -0.6
1,556 + +0.4
1,556 + +0.2
1,556 + -0.1
1,567 + -2.0
1,567 + -0.4
1,567 + +0.4
1,567 + -0.0
1,567 + -0.2
1,568 - +0.9
1,568 - -0.3
1,568 - -1.0
1,589 + +0.1
1,589 + -0.3
1,589 + -0.6
1,589 + +0.3
1,589 + -3.0
1,590 - +0.2
1,590 - -0.6
1,590 - -0.2
1,590 - +0.3
1,590 - -0.1
1,590 - -0.2
1,590 - -1.9
1,590 - +0.3
1,590 - -1.9
1,590 - -1.0
1,593 + -2.0
1,593 + +1.0
1,594 - -0.2
1,594 - +0.8
1,594 - -0.4
1,613 + -0.2
1,614 - +1.1
1,687 - -0.5
1,687 - -0.8
1,700 + -0.1
1,701 - -0.5
3,443 + +0.4
3,443 + +0.4
3,444 - -1.6
3,448 + +0.1
3,448 + +0.9
3,448 + -0.2
3,448 + -0.9
3,448 + -0.3
3,448 + -0.6
3,449 - -1.5
3,449 - -0.2
3,449 - -0.1
3,449 - +0.2
3,578 - -0.5
3,667 - -1.1
3,669 + +0.7
3,683 - -1.3
3,840 + -1.5
3,916 + ABZR87_RS16285 0.18 -0.8
3,916 + ABZR87_RS16285 0.18 -0.6
3,917 - ABZR87_RS16285 0.18 -0.7
3,931 + ABZR87_RS16285 0.20 -0.2
3,931 + ABZR87_RS16285 0.20 -1.4
3,931 + ABZR87_RS16285 0.20 -1.0
3,931 + ABZR87_RS16285 0.20 +1.0
3,931 + ABZR87_RS16285 0.20 +0.4
3,931 + ABZR87_RS16285 0.20 +1.3
3,931 + ABZR87_RS16285 0.20 -0.7
3,932 - ABZR87_RS16285 0.20 -3.1
3,932 - ABZR87_RS16285 0.20 +0.6
3,932 - ABZR87_RS16285 0.20 -0.8
3,959 + ABZR87_RS16285 0.23 -1.1
3,978 + ABZR87_RS16285 0.26 +2.0
3,978 + ABZR87_RS16285 0.26 -0.1
3,978 + ABZR87_RS16285 0.26 -2.6
3,979 - ABZR87_RS16285 0.26 +0.4
4,032 + ABZR87_RS16285 0.32 -1.0
4,033 - ABZR87_RS16285 0.32 +0.0
4,116 + ABZR87_RS16285 0.42 -0.1
4,116 + ABZR87_RS16285 0.42 -0.7
4,116 + ABZR87_RS16285 0.42 -1.4
4,116 + ABZR87_RS16285 0.42 +0.3
4,116 + ABZR87_RS16285 0.42 -0.7
4,117 - ABZR87_RS16285 0.42 -0.4
4,117 - ABZR87_RS16285 0.42 +1.1
4,117 - ABZR87_RS16285 0.42 -1.0
4,117 - ABZR87_RS16285 0.42 -0.6

Or see this region's nucleotide sequence