Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11650

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11640 and ABZR87_RS11645 are separated by 173 nucleotidesABZR87_RS11645 and ABZR87_RS11650 overlap by 4 nucleotidesABZR87_RS11650 and ABZR87_RS11655 overlap by 4 nucleotidesABZR87_RS11655 and ABZR87_RS11660 are separated by 31 nucleotides ABZR87_RS11640: ABZR87_RS11640 - acyl-CoA-binding protein, at 2,467,461 to 2,467,730 _RS11640 ABZR87_RS11645: ABZR87_RS11645 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 2,467,904 to 2,468,641 _RS11645 ABZR87_RS11650: ABZR87_RS11650 - ribosomal protein S18-alanine N-acetyltransferase, at 2,468,638 to 2,469,165 _RS11650 ABZR87_RS11655: ABZR87_RS11655 - uracil-DNA glycosylase, at 2,469,162 to 2,469,968 _RS11655 ABZR87_RS11660: ABZR87_RS11660 - lysophospholipid transporter LplT, at 2,470,000 to 2,471,316 _RS11660 Position (kb) 2468 2469 2470Strain fitness (log2 ratio) -1 0 1at 2467.639 kb on + strand, within ABZR87_RS11640at 2467.639 kb on + strand, within ABZR87_RS11640at 2467.640 kb on - strand, within ABZR87_RS11640at 2467.640 kb on - strand, within ABZR87_RS11640at 2467.768 kb on - strandat 2467.768 kb on - strandat 2467.892 kb on + strandat 2467.892 kb on + strandat 2467.892 kb on + strandat 2467.892 kb on + strandat 2467.893 kb on - strandat 2467.893 kb on - strandat 2467.893 kb on - strandat 2469.040 kb on + strand, within ABZR87_RS11650at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.041 kb on - strand, within ABZR87_RS11650at 2469.082 kb on + strand, within ABZR87_RS11650at 2469.082 kb on + strand, within ABZR87_RS11650at 2469.085 kb on + strand, within ABZR87_RS11650at 2469.868 kb on - strand, within ABZR87_RS11655at 2469.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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2,467,639 + ABZR87_RS11640 0.66 +1.6
2,467,639 + ABZR87_RS11640 0.66 -0.1
2,467,640 - ABZR87_RS11640 0.66 -0.1
2,467,640 - ABZR87_RS11640 0.66 -0.2
2,467,768 - +0.2
2,467,768 - -0.0
2,467,892 + -0.9
2,467,892 + -1.2
2,467,892 + +0.4
2,467,892 + -0.1
2,467,893 - +0.7
2,467,893 - -0.2
2,467,893 - -0.4
2,469,040 + ABZR87_RS11650 0.76 -0.2
2,469,040 + ABZR87_RS11650 0.76 -0.9
2,469,040 + ABZR87_RS11650 0.76 +0.1
2,469,040 + ABZR87_RS11650 0.76 +0.3
2,469,041 - ABZR87_RS11650 0.76 -0.8
2,469,082 + ABZR87_RS11650 0.84 -0.8
2,469,082 + ABZR87_RS11650 0.84 -0.9
2,469,085 + ABZR87_RS11650 0.85 +0.0
2,469,868 - ABZR87_RS11655 0.87 -0.8
2,469,966 + +0.1

Or see this region's nucleotide sequence