Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10920 and ABZR87_RS10925 are separated by 65 nucleotides ABZR87_RS10925 and ABZR87_RS10930 are separated by 48 nucleotides ABZR87_RS10930 and ABZR87_RS10935 are separated by 195 nucleotides
ABZR87_RS10920: ABZR87_RS10920 - histidine--tRNA ligase, at 2,312,529 to 2,313,851
_RS10920
ABZR87_RS10925: ABZR87_RS10925 - tetratricopeptide repeat protein, at 2,313,917 to 2,314,552
_RS10925
ABZR87_RS10930: ABZR87_RS10930 - outer membrane protein assembly factor BamB, at 2,314,601 to 2,315,779
_RS10930
ABZR87_RS10935: ABZR87_RS10935 - ribosome biogenesis GTPase Der, at 2,315,975 to 2,317,318
_RS10935
Position (kb)
2314
2315
2316 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2313.923 kb on + strand at 2313.924 kb on - strand at 2313.948 kb on + strand at 2313.948 kb on + strand at 2313.948 kb on + strand at 2313.949 kb on - strand at 2314.085 kb on + strand, within ABZR87_RS10925 at 2314.095 kb on + strand, within ABZR87_RS10925 at 2314.095 kb on + strand, within ABZR87_RS10925 at 2314.178 kb on + strand, within ABZR87_RS10925 at 2314.217 kb on + strand, within ABZR87_RS10925 at 2314.289 kb on + strand, within ABZR87_RS10925 at 2314.289 kb on + strand, within ABZR87_RS10925 at 2314.289 kb on + strand, within ABZR87_RS10925 at 2314.344 kb on - strand, within ABZR87_RS10925 at 2314.362 kb on + strand, within ABZR87_RS10925 at 2314.400 kb on + strand, within ABZR87_RS10925 at 2314.463 kb on + strand, within ABZR87_RS10925 at 2314.580 kb on + strand at 2314.847 kb on + strand, within ABZR87_RS10930 at 2314.847 kb on + strand, within ABZR87_RS10930 at 2315.150 kb on + strand, within ABZR87_RS10930 at 2315.521 kb on + strand, within ABZR87_RS10930 at 2315.521 kb on + strand, within ABZR87_RS10930 at 2315.521 kb on + strand, within ABZR87_RS10930 at 2315.759 kb on + strand at 2315.777 kb on + strand at 2315.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 2,313,923 + +0.4 2,313,924 - -1.7 2,313,948 + +0.1 2,313,948 + +0.1 2,313,948 + -0.4 2,313,949 - -0.7 2,314,085 + ABZR87_RS10925 0.26 +0.7 2,314,095 + ABZR87_RS10925 0.28 -0.1 2,314,095 + ABZR87_RS10925 0.28 -0.7 2,314,178 + ABZR87_RS10925 0.41 +0.4 2,314,217 + ABZR87_RS10925 0.47 +0.3 2,314,289 + ABZR87_RS10925 0.58 -0.6 2,314,289 + ABZR87_RS10925 0.58 -0.9 2,314,289 + ABZR87_RS10925 0.58 +0.1 2,314,344 - ABZR87_RS10925 0.67 -0.7 2,314,362 + ABZR87_RS10925 0.70 -0.8 2,314,400 + ABZR87_RS10925 0.76 -0.0 2,314,463 + ABZR87_RS10925 0.86 -0.7 2,314,580 + +0.3 2,314,847 + ABZR87_RS10930 0.21 -1.2 2,314,847 + ABZR87_RS10930 0.21 -1.2 2,315,150 + ABZR87_RS10930 0.47 -0.9 2,315,521 + ABZR87_RS10930 0.78 -1.2 2,315,521 + ABZR87_RS10930 0.78 -2.6 2,315,521 + ABZR87_RS10930 0.78 +3.0 2,315,759 + -2.3 2,315,777 + -0.6 2,315,777 + -0.9
Or see this region's nucleotide sequence