Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09940 and ABZR87_RS09945 are separated by 159 nucleotides ABZR87_RS09945 and ABZR87_RS09950 are separated by 2 nucleotides
ABZR87_RS09940: ABZR87_RS09940 - excinuclease ABC subunit UvrB, at 2,110,734 to 2,112,824
_RS09940
ABZR87_RS09945: ABZR87_RS09945 - recombinase, at 2,112,984 to 2,115,068
_RS09945
ABZR87_RS09950: ABZR87_RS09950 - ribokinase, at 2,115,071 to 2,116,036
_RS09950
Position (kb)
2112
2113
2114
2115
2116 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2112.265 kb on + strand, within ABZR87_RS09940 at 2112.265 kb on + strand, within ABZR87_RS09940 at 2112.266 kb on - strand, within ABZR87_RS09940 at 2112.266 kb on - strand, within ABZR87_RS09940 at 2112.334 kb on + strand, within ABZR87_RS09940 at 2112.334 kb on + strand, within ABZR87_RS09940 at 2112.447 kb on + strand, within ABZR87_RS09940 at 2112.448 kb on - strand, within ABZR87_RS09940 at 2112.448 kb on - strand, within ABZR87_RS09940 at 2112.591 kb on + strand, within ABZR87_RS09940 at 2112.591 kb on + strand, within ABZR87_RS09940 at 2112.591 kb on + strand, within ABZR87_RS09940 at 2112.591 kb on + strand, within ABZR87_RS09940 at 2112.592 kb on - strand, within ABZR87_RS09940 at 2112.645 kb on + strand at 2113.001 kb on + strand at 2113.122 kb on + strand at 2113.191 kb on + strand at 2113.205 kb on - strand, within ABZR87_RS09945 at 2113.205 kb on - strand, within ABZR87_RS09945 at 2113.473 kb on + strand, within ABZR87_RS09945 at 2113.473 kb on + strand, within ABZR87_RS09945 at 2113.647 kb on + strand, within ABZR87_RS09945 at 2113.647 kb on + strand, within ABZR87_RS09945 at 2113.648 kb on - strand, within ABZR87_RS09945 at 2113.648 kb on - strand, within ABZR87_RS09945 at 2113.738 kb on - strand, within ABZR87_RS09945 at 2113.786 kb on - strand, within ABZR87_RS09945 at 2113.919 kb on + strand, within ABZR87_RS09945 at 2113.919 kb on + strand, within ABZR87_RS09945 at 2113.920 kb on - strand, within ABZR87_RS09945 at 2114.040 kb on + strand, within ABZR87_RS09945 at 2114.040 kb on + strand, within ABZR87_RS09945 at 2114.121 kb on + strand, within ABZR87_RS09945 at 2114.122 kb on - strand, within ABZR87_RS09945 at 2114.122 kb on - strand, within ABZR87_RS09945 at 2114.122 kb on - strand, within ABZR87_RS09945 at 2114.122 kb on - strand, within ABZR87_RS09945 at 2114.162 kb on + strand, within ABZR87_RS09945 at 2114.190 kb on + strand, within ABZR87_RS09945 at 2114.190 kb on + strand, within ABZR87_RS09945 at 2114.190 kb on + strand, within ABZR87_RS09945 at 2114.191 kb on - strand, within ABZR87_RS09945 at 2114.191 kb on - strand, within ABZR87_RS09945 at 2114.191 kb on - strand, within ABZR87_RS09945 at 2114.191 kb on - strand, within ABZR87_RS09945 at 2114.505 kb on + strand, within ABZR87_RS09945 at 2114.505 kb on + strand, within ABZR87_RS09945 at 2114.579 kb on - strand, within ABZR87_RS09945 at 2114.604 kb on + strand, within ABZR87_RS09945 at 2114.605 kb on - strand, within ABZR87_RS09945 at 2114.756 kb on + strand, within ABZR87_RS09945 at 2114.756 kb on + strand, within ABZR87_RS09945 at 2114.756 kb on + strand, within ABZR87_RS09945 at 2114.757 kb on - strand, within ABZR87_RS09945 at 2114.757 kb on - strand, within ABZR87_RS09945 at 2114.757 kb on - strand, within ABZR87_RS09945 at 2114.757 kb on - strand, within ABZR87_RS09945 at 2114.834 kb on + strand, within ABZR87_RS09945 at 2114.957 kb on + strand at 2115.066 kb on + strand at 2115.067 kb on - strand at 2115.067 kb on - strand at 2115.072 kb on + strand at 2115.073 kb on - strand at 2115.073 kb on - strand at 2115.187 kb on + strand, within ABZR87_RS09950 at 2115.238 kb on + strand, within ABZR87_RS09950 at 2115.238 kb on + strand, within ABZR87_RS09950 at 2115.308 kb on + strand, within ABZR87_RS09950 at 2115.308 kb on + strand, within ABZR87_RS09950 at 2115.308 kb on + strand, within ABZR87_RS09950 at 2115.308 kb on + strand, within ABZR87_RS09950 at 2115.308 kb on + strand, within ABZR87_RS09950 at 2115.309 kb on - strand, within ABZR87_RS09950 at 2115.309 kb on - strand, within ABZR87_RS09950 at 2115.309 kb on - strand, within ABZR87_RS09950 at 2115.312 kb on + strand, within ABZR87_RS09950 at 2115.313 kb on - strand, within ABZR87_RS09950 at 2115.313 kb on - strand, within ABZR87_RS09950 at 2115.456 kb on + strand, within ABZR87_RS09950 at 2115.456 kb on + strand, within ABZR87_RS09950 at 2115.457 kb on - strand, within ABZR87_RS09950 at 2115.647 kb on + strand, within ABZR87_RS09950 at 2115.648 kb on - strand, within ABZR87_RS09950 at 2115.802 kb on - strand, within ABZR87_RS09950 at 2115.802 kb on - strand, within ABZR87_RS09950 at 2115.964 kb on + strand at 2116.046 kb on - strand at 2116.046 kb on - strand at 2116.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 2,112,265 + ABZR87_RS09940 0.73 -0.7 2,112,265 + ABZR87_RS09940 0.73 +0.4 2,112,266 - ABZR87_RS09940 0.73 -0.2 2,112,266 - ABZR87_RS09940 0.73 -0.6 2,112,334 + ABZR87_RS09940 0.77 -0.8 2,112,334 + ABZR87_RS09940 0.77 -0.8 2,112,447 + ABZR87_RS09940 0.82 +1.9 2,112,448 - ABZR87_RS09940 0.82 -1.0 2,112,448 - ABZR87_RS09940 0.82 +0.4 2,112,591 + ABZR87_RS09940 0.89 -1.0 2,112,591 + ABZR87_RS09940 0.89 -1.1 2,112,591 + ABZR87_RS09940 0.89 -0.0 2,112,591 + ABZR87_RS09940 0.89 +0.2 2,112,592 - ABZR87_RS09940 0.89 -0.4 2,112,645 + -1.4 2,113,001 + -1.2 2,113,122 + -2.2 2,113,191 + +0.5 2,113,205 - ABZR87_RS09945 0.11 +0.2 2,113,205 - ABZR87_RS09945 0.11 -1.1 2,113,473 + ABZR87_RS09945 0.23 +0.3 2,113,473 + ABZR87_RS09945 0.23 +0.7 2,113,647 + ABZR87_RS09945 0.32 +1.0 2,113,647 + ABZR87_RS09945 0.32 +0.4 2,113,648 - ABZR87_RS09945 0.32 -0.2 2,113,648 - ABZR87_RS09945 0.32 -0.3 2,113,738 - ABZR87_RS09945 0.36 -0.3 2,113,786 - ABZR87_RS09945 0.38 -1.1 2,113,919 + ABZR87_RS09945 0.45 -1.5 2,113,919 + ABZR87_RS09945 0.45 -1.3 2,113,920 - ABZR87_RS09945 0.45 +0.8 2,114,040 + ABZR87_RS09945 0.51 -3.0 2,114,040 + ABZR87_RS09945 0.51 -1.6 2,114,121 + ABZR87_RS09945 0.55 +0.7 2,114,122 - ABZR87_RS09945 0.55 +0.0 2,114,122 - ABZR87_RS09945 0.55 -1.1 2,114,122 - ABZR87_RS09945 0.55 +1.1 2,114,122 - ABZR87_RS09945 0.55 +0.7 2,114,162 + ABZR87_RS09945 0.56 +1.9 2,114,190 + ABZR87_RS09945 0.58 -0.3 2,114,190 + ABZR87_RS09945 0.58 -0.2 2,114,190 + ABZR87_RS09945 0.58 +0.1 2,114,191 - ABZR87_RS09945 0.58 -1.0 2,114,191 - ABZR87_RS09945 0.58 -0.7 2,114,191 - ABZR87_RS09945 0.58 +1.6 2,114,191 - ABZR87_RS09945 0.58 -2.7 2,114,505 + ABZR87_RS09945 0.73 -0.8 2,114,505 + ABZR87_RS09945 0.73 -1.4 2,114,579 - ABZR87_RS09945 0.76 +0.3 2,114,604 + ABZR87_RS09945 0.78 -0.4 2,114,605 - ABZR87_RS09945 0.78 -3.1 2,114,756 + ABZR87_RS09945 0.85 -0.2 2,114,756 + ABZR87_RS09945 0.85 -1.6 2,114,756 + ABZR87_RS09945 0.85 +0.9 2,114,757 - ABZR87_RS09945 0.85 -0.7 2,114,757 - ABZR87_RS09945 0.85 -3.0 2,114,757 - ABZR87_RS09945 0.85 +0.3 2,114,757 - ABZR87_RS09945 0.85 -0.6 2,114,834 + ABZR87_RS09945 0.89 +0.9 2,114,957 + +2.6 2,115,066 + -0.1 2,115,067 - +0.1 2,115,067 - +0.6 2,115,072 + -0.6 2,115,073 - +1.0 2,115,073 - +0.4 2,115,187 + ABZR87_RS09950 0.12 -0.4 2,115,238 + ABZR87_RS09950 0.17 -0.2 2,115,238 + ABZR87_RS09950 0.17 -0.3 2,115,308 + ABZR87_RS09950 0.25 -0.1 2,115,308 + ABZR87_RS09950 0.25 -0.5 2,115,308 + ABZR87_RS09950 0.25 +0.3 2,115,308 + ABZR87_RS09950 0.25 +0.1 2,115,308 + ABZR87_RS09950 0.25 -0.3 2,115,309 - ABZR87_RS09950 0.25 -0.8 2,115,309 - ABZR87_RS09950 0.25 -0.4 2,115,309 - ABZR87_RS09950 0.25 +0.0 2,115,312 + ABZR87_RS09950 0.25 +0.2 2,115,313 - ABZR87_RS09950 0.25 -0.7 2,115,313 - ABZR87_RS09950 0.25 +1.0 2,115,456 + ABZR87_RS09950 0.40 -0.3 2,115,456 + ABZR87_RS09950 0.40 +0.9 2,115,457 - ABZR87_RS09950 0.40 -0.5 2,115,647 + ABZR87_RS09950 0.60 -0.1 2,115,648 - ABZR87_RS09950 0.60 +0.4 2,115,802 - ABZR87_RS09950 0.76 -1.7 2,115,802 - ABZR87_RS09950 0.76 -0.1 2,115,964 + -0.4 2,116,046 - +0.3 2,116,046 - +1.4 2,116,046 - -1.4
Or see this region's nucleotide sequence