Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05155

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05140 and ABZR87_RS05145 are separated by 142 nucleotidesABZR87_RS05145 and ABZR87_RS05150 are separated by 46 nucleotidesABZR87_RS05150 and ABZR87_RS05155 are separated by 0 nucleotidesABZR87_RS05155 and ABZR87_RS05160 are separated by 29 nucleotidesABZR87_RS05160 and ABZR87_RS05165 are separated by 42 nucleotides ABZR87_RS05140: ABZR87_RS05140 - ATP-binding protein, at 1,082,156 to 1,083,502 _RS05140 ABZR87_RS05145: ABZR87_RS05145 - copper chaperone PCu(A)C, at 1,083,645 to 1,084,142 _RS05145 ABZR87_RS05150: ABZR87_RS05150 - hypothetical protein, at 1,084,189 to 1,084,410 _RS05150 ABZR87_RS05155: ABZR87_RS05155 - cysteine-rich CWC family protein, at 1,084,411 to 1,084,593 _RS05155 ABZR87_RS05160: ABZR87_RS05160 - zf-HC2 domain-containing protein, at 1,084,623 to 1,084,835 _RS05160 ABZR87_RS05165: ABZR87_RS05165 - sigma-70 family RNA polymerase sigma factor, at 1,084,878 to 1,085,471 _RS05165 Position (kb) 1084 1085Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1083.452 kb on + strandat 1083.452 kb on + strandat 1083.453 kb on - strandat 1083.453 kb on - strandat 1083.515 kb on + strandat 1083.515 kb on + strandat 1083.516 kb on - strandat 1083.584 kb on + strandat 1083.584 kb on + strandat 1083.584 kb on + strandat 1083.584 kb on + strandat 1083.584 kb on + strandat 1083.585 kb on - strandat 1083.585 kb on - strandat 1083.585 kb on - strandat 1083.608 kb on + strandat 1083.609 kb on - strandat 1083.963 kb on + strand, within ABZR87_RS05145at 1084.174 kb on + strandat 1084.174 kb on + strandat 1084.174 kb on + strandat 1084.174 kb on + strandat 1084.174 kb on + strandat 1084.174 kb on + strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.175 kb on - strandat 1084.194 kb on + strandat 1084.195 kb on - strandat 1084.195 kb on - strandat 1084.195 kb on - strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.600 kb on + strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.601 kb on - strandat 1084.811 kb on + strand, within ABZR87_RS05160at 1084.811 kb on + strand, within ABZR87_RS05160at 1084.811 kb on + strand, within ABZR87_RS05160at 1084.812 kb on - strand, within ABZR87_RS05160at 1084.812 kb on - strand, within ABZR87_RS05160at 1084.812 kb on - strand, within ABZR87_RS05160at 1084.851 kb on + strandat 1085.149 kb on + strand, within ABZR87_RS05165at 1085.149 kb on + strand, within ABZR87_RS05165at 1085.149 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.305 kb on + strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.306 kb on - strand, within ABZR87_RS05165at 1085.503 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.516 kb on + strandat 1085.517 kb on - strandat 1085.517 kb on - strandat 1085.517 kb on - strandat 1085.517 kb on - strandat 1085.517 kb on - strandat 1085.517 kb on - strandat 1085.517 kb on - strandat 1085.517 kb on - strandat 1085.517 kb on - strandat 1085.537 kb on - strandat 1085.537 kb on - strandat 1085.552 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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1,083,452 + -0.1
1,083,452 + +0.5
1,083,453 - -0.0
1,083,453 - +2.3
1,083,515 + -0.9
1,083,515 + -0.1
1,083,516 - -0.4
1,083,584 + +0.1
1,083,584 + -0.0
1,083,584 + -0.2
1,083,584 + +0.7
1,083,584 + -0.4
1,083,585 - -0.0
1,083,585 - -2.6
1,083,585 - -0.5
1,083,608 + +0.3
1,083,609 - -0.0
1,083,963 + ABZR87_RS05145 0.64 +0.0
1,084,174 + -1.3
1,084,174 + +0.7
1,084,174 + -0.4
1,084,174 + +0.4
1,084,174 + -0.5
1,084,174 + -0.4
1,084,175 - +1.0
1,084,175 - -0.3
1,084,175 - +0.4
1,084,175 - -0.1
1,084,175 - +0.1
1,084,175 - -2.8
1,084,175 - -1.4
1,084,175 - -0.4
1,084,175 - -0.7
1,084,175 - +0.3
1,084,175 - +0.2
1,084,194 + +0.2
1,084,195 - -1.6
1,084,195 - +0.0
1,084,195 - -0.5
1,084,600 + -0.5
1,084,600 + -0.5
1,084,600 + +0.8
1,084,600 + +0.1
1,084,600 + +0.1
1,084,600 + -0.5
1,084,600 + -0.8
1,084,600 + -1.0
1,084,600 + -0.2
1,084,600 + -0.7
1,084,600 + -0.2
1,084,600 + +0.7
1,084,600 + -2.2
1,084,601 - -0.6
1,084,601 - +0.7
1,084,601 - +0.4
1,084,601 - -0.2
1,084,601 - +0.3
1,084,601 - +1.0
1,084,601 - -0.1
1,084,601 - -1.3
1,084,601 - -0.3
1,084,601 - +0.4
1,084,601 - -0.3
1,084,601 - -0.9
1,084,811 + ABZR87_RS05160 0.88 +0.4
1,084,811 + ABZR87_RS05160 0.88 +0.5
1,084,811 + ABZR87_RS05160 0.88 +0.4
1,084,812 - ABZR87_RS05160 0.89 +0.0
1,084,812 - ABZR87_RS05160 0.89 +0.2
1,084,812 - ABZR87_RS05160 0.89 -0.2
1,084,851 + +0.1
1,085,149 + ABZR87_RS05165 0.46 +1.2
1,085,149 + ABZR87_RS05165 0.46 -0.1
1,085,149 + ABZR87_RS05165 0.46 +0.4
1,085,305 + ABZR87_RS05165 0.72 -0.2
1,085,305 + ABZR87_RS05165 0.72 +0.3
1,085,305 + ABZR87_RS05165 0.72 -0.6
1,085,305 + ABZR87_RS05165 0.72 -0.9
1,085,305 + ABZR87_RS05165 0.72 +0.2
1,085,305 + ABZR87_RS05165 0.72 -0.8
1,085,305 + ABZR87_RS05165 0.72 -0.8
1,085,305 + ABZR87_RS05165 0.72 +1.1
1,085,305 + ABZR87_RS05165 0.72 -1.4
1,085,305 + ABZR87_RS05165 0.72 +0.4
1,085,306 - ABZR87_RS05165 0.72 -0.7
1,085,306 - ABZR87_RS05165 0.72 -0.2
1,085,306 - ABZR87_RS05165 0.72 +0.6
1,085,306 - ABZR87_RS05165 0.72 -0.5
1,085,306 - ABZR87_RS05165 0.72 +0.8
1,085,306 - ABZR87_RS05165 0.72 -0.0
1,085,306 - ABZR87_RS05165 0.72 +0.7
1,085,306 - ABZR87_RS05165 0.72 -0.1
1,085,306 - ABZR87_RS05165 0.72 +0.1
1,085,306 - ABZR87_RS05165 0.72 -0.9
1,085,306 - ABZR87_RS05165 0.72 +0.2
1,085,306 - ABZR87_RS05165 0.72 +2.0
1,085,306 - ABZR87_RS05165 0.72 +1.4
1,085,503 + +1.3
1,085,516 + -0.4
1,085,516 + -0.1
1,085,516 + +0.2
1,085,516 + -0.2
1,085,516 + -0.5
1,085,516 + +1.0
1,085,516 + -0.2
1,085,516 + +0.7
1,085,516 + +0.9
1,085,516 + +0.3
1,085,516 + +0.5
1,085,517 - -0.7
1,085,517 - +2.2
1,085,517 - -1.7
1,085,517 - -0.5
1,085,517 - +0.3
1,085,517 - -0.0
1,085,517 - +1.8
1,085,517 - +0.3
1,085,517 - -0.7
1,085,537 - +1.5
1,085,537 - +0.5
1,085,552 - -0.5

Or see this region's nucleotide sequence