Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04195

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04185 and ABZR87_RS04190 are separated by 119 nucleotidesABZR87_RS04190 and ABZR87_RS04195 are separated by 233 nucleotidesABZR87_RS04195 and ABZR87_RS04200 are separated by 14 nucleotidesABZR87_RS04200 and ABZR87_RS04205 are separated by 80 nucleotides ABZR87_RS04185: ABZR87_RS04185 - hypothetical protein, at 875,399 to 875,836 _RS04185 ABZR87_RS04190: ABZR87_RS04190 - hypothetical protein, at 875,956 to 876,207 _RS04190 ABZR87_RS04195: ABZR87_RS04195 - branched-chain amino acid ABC transporter permease, at 876,441 to 877,427 _RS04195 ABZR87_RS04200: ABZR87_RS04200 - branched-chain amino acid ABC transporter permease, at 877,442 to 878,326 _RS04200 ABZR87_RS04205: ABZR87_RS04205 - ABC transporter substrate-binding protein, at 878,407 to 879,615 _RS04205 Position (kb) 876 877 878Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 875.522 kb on + strand, within ABZR87_RS04185at 875.522 kb on + strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.541 kb on + strand, within ABZR87_RS04185at 875.542 kb on - strand, within ABZR87_RS04185at 875.542 kb on - strand, within ABZR87_RS04185at 875.734 kb on + strand, within ABZR87_RS04185at 875.734 kb on + strand, within ABZR87_RS04185at 875.735 kb on - strand, within ABZR87_RS04185at 875.879 kb on + strandat 876.022 kb on + strand, within ABZR87_RS04190at 876.022 kb on + strand, within ABZR87_RS04190at 876.023 kb on - strand, within ABZR87_RS04190at 876.205 kb on + strandat 876.205 kb on + strandat 876.245 kb on + strandat 876.245 kb on + strandat 876.245 kb on + strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.263 kb on + strandat 876.263 kb on + strandat 876.263 kb on + strandat 876.263 kb on + strandat 876.263 kb on + strandat 876.264 kb on - strandat 876.264 kb on - strandat 876.305 kb on + strandat 876.305 kb on + strandat 876.305 kb on + strandat 876.306 kb on - strandat 876.334 kb on + strandat 876.334 kb on + strandat 876.335 kb on - strandat 876.360 kb on + strandat 876.361 kb on - strandat 876.361 kb on - strandat 876.361 kb on - strandat 876.557 kb on + strand, within ABZR87_RS04195at 876.558 kb on - strand, within ABZR87_RS04195at 876.829 kb on + strand, within ABZR87_RS04195at 876.830 kb on - strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.952 kb on + strand, within ABZR87_RS04195at 876.953 kb on - strand, within ABZR87_RS04195at 876.953 kb on - strand, within ABZR87_RS04195at 876.953 kb on - strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.061 kb on - strand, within ABZR87_RS04195at 877.061 kb on - strand, within ABZR87_RS04195at 877.061 kb on - strand, within ABZR87_RS04195at 877.061 kb on - strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.100 kb on - strand, within ABZR87_RS04195at 877.100 kb on - strand, within ABZR87_RS04195at 877.100 kb on - strand, within ABZR87_RS04195at 877.213 kb on + strand, within ABZR87_RS04195at 877.214 kb on - strand, within ABZR87_RS04195at 877.225 kb on + strand, within ABZR87_RS04195at 877.225 kb on + strand, within ABZR87_RS04195at 877.226 kb on - strand, within ABZR87_RS04195at 877.226 kb on - strand, within ABZR87_RS04195at 877.276 kb on + strand, within ABZR87_RS04195at 877.394 kb on - strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.403 kb on - strandat 877.403 kb on - strandat 877.403 kb on - strandat 877.403 kb on - strandat 877.403 kb on - strandat 877.531 kb on - strand, within ABZR87_RS04200at 877.726 kb on - strand, within ABZR87_RS04200at 877.726 kb on - strand, within ABZR87_RS04200at 877.803 kb on + strand, within ABZR87_RS04200at 877.804 kb on - strand, within ABZR87_RS04200at 877.884 kb on + strand, within ABZR87_RS04200at 877.885 kb on - strand, within ABZR87_RS04200at 877.944 kb on + strand, within ABZR87_RS04200at 877.944 kb on + strand, within ABZR87_RS04200at 877.945 kb on - strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.966 kb on - strand, within ABZR87_RS04200at 877.966 kb on - strand, within ABZR87_RS04200at 877.966 kb on - strand, within ABZR87_RS04200at 878.025 kb on + strand, within ABZR87_RS04200at 878.026 kb on - strand, within ABZR87_RS04200at 878.043 kb on + strand, within ABZR87_RS04200at 878.043 kb on + strand, within ABZR87_RS04200at 878.044 kb on - strand, within ABZR87_RS04200at 878.044 kb on - strand, within ABZR87_RS04200at 878.044 kb on - strand, within ABZR87_RS04200at 878.124 kb on + strand, within ABZR87_RS04200at 878.140 kb on - strand, within ABZR87_RS04200at 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.254 kb on - strandat 878.254 kb on - strandat 878.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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875,522 + ABZR87_RS04185 0.28 -1.9
875,522 + ABZR87_RS04185 0.28 -0.1
875,523 - ABZR87_RS04185 0.28 +0.3
875,523 - ABZR87_RS04185 0.28 -0.4
875,523 - ABZR87_RS04185 0.28 -1.2
875,523 - ABZR87_RS04185 0.28 +1.2
875,541 + ABZR87_RS04185 0.32 -0.3
875,542 - ABZR87_RS04185 0.33 +0.4
875,542 - ABZR87_RS04185 0.33 +0.9
875,734 + ABZR87_RS04185 0.76 -0.5
875,734 + ABZR87_RS04185 0.76 -0.6
875,735 - ABZR87_RS04185 0.77 +0.7
875,879 + -1.2
876,022 + ABZR87_RS04190 0.26 +0.6
876,022 + ABZR87_RS04190 0.26 +0.5
876,023 - ABZR87_RS04190 0.27 -1.1
876,205 + +0.8
876,205 + +0.0
876,245 + -1.0
876,245 + +0.2
876,245 + -2.3
876,246 - -0.9
876,246 - -0.9
876,246 - -1.8
876,246 - +0.6
876,246 - -0.1
876,246 - -2.4
876,263 + -3.4
876,263 + -2.6
876,263 + +1.2
876,263 + -3.3
876,263 + -2.5
876,264 - -3.0
876,264 - -1.3
876,305 + -3.7
876,305 + -1.4
876,305 + -2.4
876,306 - -1.8
876,334 + -3.6
876,334 + -2.5
876,335 - -3.6
876,360 + -2.1
876,361 - -3.0
876,361 - -3.2
876,361 - -2.5
876,557 + ABZR87_RS04195 0.12 -3.1
876,558 - ABZR87_RS04195 0.12 -2.2
876,829 + ABZR87_RS04195 0.39 -4.3
876,830 - ABZR87_RS04195 0.39 -3.9
876,949 + ABZR87_RS04195 0.51 -1.9
876,949 + ABZR87_RS04195 0.51 -0.7
876,949 + ABZR87_RS04195 0.51 -4.9
876,949 + ABZR87_RS04195 0.51 +0.1
876,949 + ABZR87_RS04195 0.51 -2.1
876,949 + ABZR87_RS04195 0.51 -2.5
876,950 - ABZR87_RS04195 0.52 -2.2
876,950 - ABZR87_RS04195 0.52 -3.4
876,950 - ABZR87_RS04195 0.52 -2.8
876,950 - ABZR87_RS04195 0.52 -3.2
876,950 - ABZR87_RS04195 0.52 -3.2
876,950 - ABZR87_RS04195 0.52 -3.8
876,952 + ABZR87_RS04195 0.52 -4.0
876,953 - ABZR87_RS04195 0.52 -4.1
876,953 - ABZR87_RS04195 0.52 -1.2
876,953 - ABZR87_RS04195 0.52 -2.0
877,060 + ABZR87_RS04195 0.63 -2.5
877,060 + ABZR87_RS04195 0.63 -1.0
877,060 + ABZR87_RS04195 0.63 -3.3
877,060 + ABZR87_RS04195 0.63 -3.4
877,060 + ABZR87_RS04195 0.63 -2.8
877,060 + ABZR87_RS04195 0.63 -2.8
877,060 + ABZR87_RS04195 0.63 -2.6
877,061 - ABZR87_RS04195 0.63 -2.4
877,061 - ABZR87_RS04195 0.63 -2.0
877,061 - ABZR87_RS04195 0.63 -2.0
877,061 - ABZR87_RS04195 0.63 -4.1
877,099 + ABZR87_RS04195 0.67 -3.5
877,099 + ABZR87_RS04195 0.67 -2.6
877,099 + ABZR87_RS04195 0.67 -2.4
877,099 + ABZR87_RS04195 0.67 -2.5
877,099 + ABZR87_RS04195 0.67 -4.6
877,099 + ABZR87_RS04195 0.67 -4.5
877,099 + ABZR87_RS04195 0.67 -3.5
877,099 + ABZR87_RS04195 0.67 -3.0
877,099 + ABZR87_RS04195 0.67 -3.3
877,100 - ABZR87_RS04195 0.67 -0.8
877,100 - ABZR87_RS04195 0.67 -2.2
877,100 - ABZR87_RS04195 0.67 -3.4
877,213 + ABZR87_RS04195 0.78 -2.2
877,214 - ABZR87_RS04195 0.78 -2.6
877,225 + ABZR87_RS04195 0.79 -3.3
877,225 + ABZR87_RS04195 0.79 -3.2
877,226 - ABZR87_RS04195 0.80 -2.7
877,226 - ABZR87_RS04195 0.80 -2.6
877,276 + ABZR87_RS04195 0.85 -2.7
877,394 - -1.4
877,402 + -3.4
877,402 + -1.4
877,402 + -5.1
877,402 + -4.2
877,402 + -2.5
877,402 + +0.2
877,402 + +0.8
877,403 - -2.2
877,403 - -1.9
877,403 - -2.4
877,403 - -4.4
877,403 - -1.8
877,531 - ABZR87_RS04200 0.10 -2.6
877,726 - ABZR87_RS04200 0.32 -3.5
877,726 - ABZR87_RS04200 0.32 -3.9
877,803 + ABZR87_RS04200 0.41 -3.2
877,804 - ABZR87_RS04200 0.41 -2.8
877,884 + ABZR87_RS04200 0.50 -2.8
877,885 - ABZR87_RS04200 0.50 -2.7
877,944 + ABZR87_RS04200 0.57 -2.5
877,944 + ABZR87_RS04200 0.57 -4.0
877,945 - ABZR87_RS04200 0.57 -0.6
877,965 + ABZR87_RS04200 0.59 -1.0
877,965 + ABZR87_RS04200 0.59 -2.9
877,965 + ABZR87_RS04200 0.59 -0.3
877,965 + ABZR87_RS04200 0.59 -2.2
877,966 - ABZR87_RS04200 0.59 -3.4
877,966 - ABZR87_RS04200 0.59 -2.4
877,966 - ABZR87_RS04200 0.59 -2.1
878,025 + ABZR87_RS04200 0.66 -2.6
878,026 - ABZR87_RS04200 0.66 -3.6
878,043 + ABZR87_RS04200 0.68 -4.5
878,043 + ABZR87_RS04200 0.68 -4.1
878,044 - ABZR87_RS04200 0.68 -3.8
878,044 - ABZR87_RS04200 0.68 -3.4
878,044 - ABZR87_RS04200 0.68 -3.2
878,124 + ABZR87_RS04200 0.77 -4.1
878,140 - ABZR87_RS04200 0.79 -4.9
878,253 + -3.4
878,253 + -4.6
878,253 + -4.9
878,253 + -2.9
878,253 + -4.1
878,253 + -1.5
878,253 + -3.3
878,253 + -1.9
878,254 - -3.0
878,254 - -2.5
878,401 - -1.7

Or see this region's nucleotide sequence