Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03490 and ABZR87_RS03495 are separated by 75 nucleotides ABZR87_RS03495 and ABZR87_RS03500 are separated by 147 nucleotides
ABZR87_RS03490: ABZR87_RS03490 - indolepyruvate ferredoxin oxidoreductase family protein, at 729,284 to 732,844
_RS03490
ABZR87_RS03495: ABZR87_RS03495 - exodeoxyribonuclease I, at 732,920 to 734,359
_RS03495
ABZR87_RS03500: ABZR87_RS03500 - alcohol dehydrogenase AdhP, at 734,507 to 735,529
_RS03500
Position (kb) 732
733
734
735 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 732.218 kb on + strand, within ABZR87_RS03490 at 732.219 kb on - strand, within ABZR87_RS03490 at 732.233 kb on + strand, within ABZR87_RS03490 at 732.234 kb on - strand, within ABZR87_RS03490 at 732.234 kb on - strand, within ABZR87_RS03490 at 732.234 kb on - strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.368 kb on + strand, within ABZR87_RS03490 at 732.369 kb on - strand, within ABZR87_RS03490 at 732.387 kb on - strand, within ABZR87_RS03490 at 732.387 kb on - strand, within ABZR87_RS03490 at 732.387 kb on - strand, within ABZR87_RS03490 at 732.449 kb on + strand, within ABZR87_RS03490 at 732.648 kb on - strand at 732.798 kb on + strand at 732.798 kb on + strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.945 kb on + strand at 732.946 kb on - strand at 732.951 kb on + strand at 732.952 kb on - strand at 732.952 kb on - strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.104 kb on + strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.317 kb on + strand, within ABZR87_RS03495 at 733.318 kb on - strand, within ABZR87_RS03495 at 733.318 kb on - strand, within ABZR87_RS03495 at 733.318 kb on - strand, within ABZR87_RS03495 at 733.668 kb on + strand, within ABZR87_RS03495 at 733.668 kb on + strand, within ABZR87_RS03495 at 733.668 kb on + strand, within ABZR87_RS03495 at 733.668 kb on + strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.067 kb on + strand, within ABZR87_RS03495 at 734.067 kb on + strand, within ABZR87_RS03495 at 734.068 kb on - strand, within ABZR87_RS03495 at 734.325 kb on + strand at 734.400 kb on + strand at 734.401 kb on - strand at 734.401 kb on - strand at 734.401 kb on - strand at 734.430 kb on + strand at 734.430 kb on + strand at 734.431 kb on - strand at 734.431 kb on - strand at 734.481 kb on + strand at 734.481 kb on + strand at 734.481 kb on + strand at 734.481 kb on + strand at 734.481 kb on + strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.532 kb on + strand at 734.635 kb on + strand, within ABZR87_RS03500 at 734.635 kb on + strand, within ABZR87_RS03500 at 734.635 kb on + strand, within ABZR87_RS03500 at 734.636 kb on - strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.740 kb on - strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.784 kb on - strand, within ABZR87_RS03500 at 734.784 kb on - strand, within ABZR87_RS03500 at 734.837 kb on + strand, within ABZR87_RS03500 at 734.837 kb on + strand, within ABZR87_RS03500 at 734.838 kb on - strand, within ABZR87_RS03500 at 734.838 kb on - strand, within ABZR87_RS03500 at 734.838 kb on - strand, within ABZR87_RS03500 at 734.859 kb on - strand, within ABZR87_RS03500 at 734.859 kb on - strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.886 kb on - strand, within ABZR87_RS03500 at 734.886 kb on - strand, within ABZR87_RS03500 at 734.886 kb on - strand, within ABZR87_RS03500 at 734.886 kb on - strand, within ABZR87_RS03500 at 734.889 kb on + strand, within ABZR87_RS03500 at 734.889 kb on + strand, within ABZR87_RS03500 at 734.889 kb on + strand, within ABZR87_RS03500 at 734.889 kb on + strand, within ABZR87_RS03500 at 734.890 kb on - strand, within ABZR87_RS03500 at 734.890 kb on - strand, within ABZR87_RS03500 at 734.890 kb on - strand, within ABZR87_RS03500 at 734.890 kb on - strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.907 kb on - strand, within ABZR87_RS03500 at 734.907 kb on - strand, within ABZR87_RS03500 at 734.907 kb on - strand, within ABZR87_RS03500 at 734.907 kb on - strand, within ABZR87_RS03500 at 734.970 kb on + strand, within ABZR87_RS03500 at 734.970 kb on + strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.978 kb on + strand, within ABZR87_RS03500 at 734.978 kb on + strand, within ABZR87_RS03500 at 734.978 kb on + strand, within ABZR87_RS03500 at 734.979 kb on - strand, within ABZR87_RS03500 at 734.979 kb on - strand, within ABZR87_RS03500 at 734.979 kb on - strand, within ABZR87_RS03500 at 734.979 kb on - strand, within ABZR87_RS03500 at 735.066 kb on - strand, within ABZR87_RS03500 at 735.066 kb on - strand, within ABZR87_RS03500 at 735.066 kb on - strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.211 kb on - strand, within ABZR87_RS03500 at 735.211 kb on - strand, within ABZR87_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 732,218 + ABZR87_RS03490 0.82 -0.4 732,219 - ABZR87_RS03490 0.82 +1.1 732,233 + ABZR87_RS03490 0.83 +0.5 732,234 - ABZR87_RS03490 0.83 -0.2 732,234 - ABZR87_RS03490 0.83 -0.3 732,234 - ABZR87_RS03490 0.83 +0.9 732,356 + ABZR87_RS03490 0.86 +0.9 732,356 + ABZR87_RS03490 0.86 -0.4 732,356 + ABZR87_RS03490 0.86 -0.5 732,356 + ABZR87_RS03490 0.86 +0.1 732,356 + ABZR87_RS03490 0.86 -1.2 732,357 - ABZR87_RS03490 0.86 -0.4 732,357 - ABZR87_RS03490 0.86 +0.6 732,357 - ABZR87_RS03490 0.86 +1.2 732,357 - ABZR87_RS03490 0.86 -0.4 732,357 - ABZR87_RS03490 0.86 +0.3 732,357 - ABZR87_RS03490 0.86 -0.1 732,357 - ABZR87_RS03490 0.86 +0.4 732,368 + ABZR87_RS03490 0.87 -0.7 732,369 - ABZR87_RS03490 0.87 -0.1 732,387 - ABZR87_RS03490 0.87 -0.2 732,387 - ABZR87_RS03490 0.87 +0.8 732,387 - ABZR87_RS03490 0.87 -0.4 732,449 + ABZR87_RS03490 0.89 +0.6 732,648 - -0.2 732,798 + -1.2 732,798 + +0.5 732,799 - +0.8 732,799 - -1.3 732,799 - -0.5 732,799 - -1.3 732,799 - -1.5 732,799 - -1.9 732,799 - +1.2 732,799 - -0.8 732,799 - +0.6 732,945 + +0.5 732,946 - +1.8 732,951 + +1.8 732,952 - +0.6 732,952 - +1.2 733,050 + +0.5 733,050 + +0.9 733,050 + +1.4 733,050 + +0.4 733,050 + +0.9 733,050 + +2.1 733,050 + +0.9 733,104 + ABZR87_RS03495 0.13 -0.0 733,105 - ABZR87_RS03495 0.13 +1.6 733,105 - ABZR87_RS03495 0.13 +0.4 733,105 - ABZR87_RS03495 0.13 +1.3 733,105 - ABZR87_RS03495 0.13 +0.6 733,105 - ABZR87_RS03495 0.13 +0.7 733,105 - ABZR87_RS03495 0.13 +0.7 733,317 + ABZR87_RS03495 0.28 -0.4 733,318 - ABZR87_RS03495 0.28 +1.5 733,318 - ABZR87_RS03495 0.28 +1.4 733,318 - ABZR87_RS03495 0.28 +0.3 733,668 + ABZR87_RS03495 0.52 -0.1 733,668 + ABZR87_RS03495 0.52 -1.4 733,668 + ABZR87_RS03495 0.52 +0.5 733,668 + ABZR87_RS03495 0.52 +0.2 733,669 - ABZR87_RS03495 0.52 +1.1 733,669 - ABZR87_RS03495 0.52 +1.0 733,669 - ABZR87_RS03495 0.52 +0.5 733,669 - ABZR87_RS03495 0.52 +0.6 733,669 - ABZR87_RS03495 0.52 -0.2 734,065 + ABZR87_RS03495 0.80 +1.4 734,065 + ABZR87_RS03495 0.80 +0.7 734,065 + ABZR87_RS03495 0.80 -0.6 734,065 + ABZR87_RS03495 0.80 +1.9 734,065 + ABZR87_RS03495 0.80 +0.2 734,065 + ABZR87_RS03495 0.80 +1.4 734,065 + ABZR87_RS03495 0.80 +0.3 734,065 + ABZR87_RS03495 0.80 -0.3 734,065 + ABZR87_RS03495 0.80 +0.1 734,065 + ABZR87_RS03495 0.80 +0.4 734,066 - ABZR87_RS03495 0.80 +1.1 734,066 - ABZR87_RS03495 0.80 +1.2 734,066 - ABZR87_RS03495 0.80 +1.7 734,066 - ABZR87_RS03495 0.80 +1.3 734,066 - ABZR87_RS03495 0.80 +1.1 734,066 - ABZR87_RS03495 0.80 +2.2 734,067 + ABZR87_RS03495 0.80 -0.2 734,067 + ABZR87_RS03495 0.80 +0.8 734,068 - ABZR87_RS03495 0.80 +0.9 734,325 + +0.5 734,400 + -0.6 734,401 - +0.6 734,401 - +1.6 734,401 - -0.3 734,430 + -1.0 734,430 + -0.2 734,431 - -0.0 734,431 - -1.0 734,481 + -1.1 734,481 + -0.7 734,481 + -2.6 734,481 + -1.3 734,481 + -0.2 734,482 - +2.8 734,482 - -1.0 734,482 - -0.3 734,482 - +0.4 734,482 - +0.0 734,482 - -0.2 734,482 - -0.1 734,482 - +0.0 734,482 - -0.5 734,532 + +0.4 734,635 + ABZR87_RS03500 0.13 -0.1 734,635 + ABZR87_RS03500 0.13 +0.8 734,635 + ABZR87_RS03500 0.13 +0.2 734,636 - ABZR87_RS03500 0.13 +0.2 734,714 + ABZR87_RS03500 0.20 -0.1 734,714 + ABZR87_RS03500 0.20 +0.1 734,714 + ABZR87_RS03500 0.20 +0.1 734,714 + ABZR87_RS03500 0.20 +0.7 734,714 + ABZR87_RS03500 0.20 -0.9 734,714 + ABZR87_RS03500 0.20 +0.6 734,714 + ABZR87_RS03500 0.20 -0.1 734,714 + ABZR87_RS03500 0.20 +0.3 734,715 - ABZR87_RS03500 0.20 -0.0 734,715 - ABZR87_RS03500 0.20 +1.8 734,715 - ABZR87_RS03500 0.20 +0.6 734,715 - ABZR87_RS03500 0.20 -0.6 734,715 - ABZR87_RS03500 0.20 +1.2 734,715 - ABZR87_RS03500 0.20 -0.2 734,740 - ABZR87_RS03500 0.23 -0.7 734,783 + ABZR87_RS03500 0.27 +0.9 734,783 + ABZR87_RS03500 0.27 -0.2 734,783 + ABZR87_RS03500 0.27 +0.1 734,783 + ABZR87_RS03500 0.27 -1.2 734,783 + ABZR87_RS03500 0.27 -0.1 734,783 + ABZR87_RS03500 0.27 -0.3 734,783 + ABZR87_RS03500 0.27 +0.9 734,784 - ABZR87_RS03500 0.27 -1.4 734,784 - ABZR87_RS03500 0.27 -1.4 734,837 + ABZR87_RS03500 0.32 +0.3 734,837 + ABZR87_RS03500 0.32 -0.4 734,838 - ABZR87_RS03500 0.32 +0.3 734,838 - ABZR87_RS03500 0.32 +1.4 734,838 - ABZR87_RS03500 0.32 -1.1 734,859 - ABZR87_RS03500 0.34 -0.3 734,859 - ABZR87_RS03500 0.34 -0.4 734,885 + ABZR87_RS03500 0.37 +0.2 734,885 + ABZR87_RS03500 0.37 +0.7 734,885 + ABZR87_RS03500 0.37 +0.1 734,885 + ABZR87_RS03500 0.37 +0.4 734,885 + ABZR87_RS03500 0.37 +0.1 734,885 + ABZR87_RS03500 0.37 +0.0 734,885 + ABZR87_RS03500 0.37 +0.4 734,885 + ABZR87_RS03500 0.37 -0.1 734,885 + ABZR87_RS03500 0.37 -0.8 734,885 + ABZR87_RS03500 0.37 +1.4 734,885 + ABZR87_RS03500 0.37 -0.2 734,885 + ABZR87_RS03500 0.37 +0.1 734,886 - ABZR87_RS03500 0.37 -0.5 734,886 - ABZR87_RS03500 0.37 +0.2 734,886 - ABZR87_RS03500 0.37 +0.2 734,886 - ABZR87_RS03500 0.37 +1.1 734,889 + ABZR87_RS03500 0.37 -0.1 734,889 + ABZR87_RS03500 0.37 +0.3 734,889 + ABZR87_RS03500 0.37 -0.4 734,889 + ABZR87_RS03500 0.37 +0.8 734,890 - ABZR87_RS03500 0.37 +1.3 734,890 - ABZR87_RS03500 0.37 +0.1 734,890 - ABZR87_RS03500 0.37 -2.6 734,890 - ABZR87_RS03500 0.37 -0.3 734,906 + ABZR87_RS03500 0.39 -0.2 734,906 + ABZR87_RS03500 0.39 +0.4 734,906 + ABZR87_RS03500 0.39 -0.2 734,906 + ABZR87_RS03500 0.39 +1.3 734,906 + ABZR87_RS03500 0.39 +0.5 734,906 + ABZR87_RS03500 0.39 +1.8 734,907 - ABZR87_RS03500 0.39 +0.4 734,907 - ABZR87_RS03500 0.39 -1.4 734,907 - ABZR87_RS03500 0.39 -0.6 734,907 - ABZR87_RS03500 0.39 +0.2 734,970 + ABZR87_RS03500 0.45 -0.3 734,970 + ABZR87_RS03500 0.45 +0.5 734,971 - ABZR87_RS03500 0.45 +0.1 734,971 - ABZR87_RS03500 0.45 +0.7 734,971 - ABZR87_RS03500 0.45 -0.9 734,971 - ABZR87_RS03500 0.45 +0.0 734,971 - ABZR87_RS03500 0.45 +0.3 734,978 + ABZR87_RS03500 0.46 +0.6 734,978 + ABZR87_RS03500 0.46 +1.3 734,978 + ABZR87_RS03500 0.46 -1.2 734,979 - ABZR87_RS03500 0.46 -0.1 734,979 - ABZR87_RS03500 0.46 -0.7 734,979 - ABZR87_RS03500 0.46 -0.3 734,979 - ABZR87_RS03500 0.46 -0.3 735,066 - ABZR87_RS03500 0.55 +0.3 735,066 - ABZR87_RS03500 0.55 +0.1 735,066 - ABZR87_RS03500 0.55 -0.9 735,210 + ABZR87_RS03500 0.69 -0.4 735,210 + ABZR87_RS03500 0.69 +0.8 735,210 + ABZR87_RS03500 0.69 +0.2 735,210 + ABZR87_RS03500 0.69 +0.2 735,210 + ABZR87_RS03500 0.69 -0.9 735,211 - ABZR87_RS03500 0.69 -1.2 735,211 - ABZR87_RS03500 0.69 +0.4
Or see this region's nucleotide sequence