Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005359

Experiment: R2A with Clay 500 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Clay 500 g/L
1,628,836	+		ABIE53_005358	0.18	-1.1
1,628,837	-		ABIE53_005358	0.18	-0.6
1,628,837	-		ABIE53_005358	0.18	+2.9
1,628,952	+		ABIE53_005358	0.28	+2.6
1,628,952	+		ABIE53_005358	0.28	+2.9
1,628,952	+		ABIE53_005358	0.28	-0.3
1,628,953	-		ABIE53_005358	0.28	+0.2
1,628,953	-		ABIE53_005358	0.28	-2.2
1,628,953	-		ABIE53_005358	0.28	-1.0
1,628,959	+		ABIE53_005358	0.29	+1.6
1,628,960	-		ABIE53_005358	0.29	+1.6
1,629,160	+		ABIE53_005358	0.47	-0.5
1,629,405	+		ABIE53_005358	0.69	-0.5
1,629,477	+		ABIE53_005358	0.75	-2.0
1,629,477	+		ABIE53_005358	0.75	+0.4
1,629,477	+		ABIE53_005358	0.75	+0.6
1,629,477	+		ABIE53_005358	0.75	-0.4
1,629,477	+		ABIE53_005358	0.75	-1.4
1,629,478	-		ABIE53_005358	0.75	-1.2
1,629,478	-		ABIE53_005358	0.75	+3.2
1,629,546	+		ABIE53_005358	0.81	-0.2
1,629,547	-		ABIE53_005358	0.81	-1.5
1,629,573	-		ABIE53_005358	0.84	-0.0
1,629,573	-		ABIE53_005358	0.84	-0.4
1,629,624	+		ABIE53_005358	0.88	+0.1
1,629,624	+		ABIE53_005358	0.88	+2.2
1,629,625	-		ABIE53_005358	0.88	-0.6
1,629,753	+				-0.8
1,629,780	+				-0.3
1,629,995	+		ABIE53_005359	0.15	-1.4
1,630,152	+		ABIE53_005359	0.26	+2.9
1,630,227	+		ABIE53_005359	0.31	+0.2
1,630,227	+		ABIE53_005359	0.31	+0.8
1,630,227	+		ABIE53_005359	0.31	-0.6
1,630,251	+		ABIE53_005359	0.33	+0.6
1,630,407	+		ABIE53_005359	0.44	+0.6
1,630,452	+		ABIE53_005359	0.47	-0.4
1,630,452	+		ABIE53_005359	0.47	-0.8
1,630,453	-		ABIE53_005359	0.47	-0.8
1,630,453	-		ABIE53_005359	0.47	-1.4
1,630,461	+		ABIE53_005359	0.47	+0.8
1,630,461	+		ABIE53_005359	0.47	+2.9
1,630,461	+		ABIE53_005359	0.47	+1.6
1,630,461	+		ABIE53_005359	0.47	+0.6
1,630,461	+		ABIE53_005359	0.47	+0.6
1,630,461	+		ABIE53_005359	0.47	+0.2
1,630,461	+		ABIE53_005359	0.47	-2.1
1,630,462	-		ABIE53_005359	0.47	+0.2
1,630,462	-		ABIE53_005359	0.47	-1.4
1,630,463	+		ABIE53_005359	0.48	-0.6
1,630,511	+		ABIE53_005359	0.51	+0.8
1,630,511	+		ABIE53_005359	0.51	+0.6
1,630,570	-		ABIE53_005359	0.55	-1.0
1,630,623	+		ABIE53_005359	0.59	+0.4
1,630,624	-		ABIE53_005359	0.59	+0.2
1,630,677	+		ABIE53_005359	0.62	-0.2
1,630,677	+		ABIE53_005359	0.62	-0.7
1,630,678	-		ABIE53_005359	0.62	-2.6
1,630,695	+		ABIE53_005359	0.64	+0.1
1,630,696	-		ABIE53_005359	0.64	+0.6
1,630,707	+		ABIE53_005359	0.64	-1.9
1,630,708	-		ABIE53_005359	0.65	+0.9
1,630,764	+		ABIE53_005359	0.68	+1.9
1,630,765	-		ABIE53_005359	0.68	-0.3
1,630,765	-		ABIE53_005359	0.68	+0.9
1,630,765	-		ABIE53_005359	0.68	+0.6
1,630,779	+		ABIE53_005359	0.69	+0.7
1,630,779	+		ABIE53_005359	0.69	-1.0
1,630,780	-		ABIE53_005359	0.70	+2.2
1,630,795	-		ABIE53_005359	0.71	-1.2
1,630,831	+		ABIE53_005359	0.73	-0.4
1,630,835	+		ABIE53_005359	0.73	-0.2
1,630,835	+		ABIE53_005359	0.73	-1.8
1,630,836	-		ABIE53_005359	0.73	-1.8
1,630,836	-		ABIE53_005359	0.73	+0.6
1,630,839	+		ABIE53_005359	0.74	+3.4
1,630,839	+		ABIE53_005359	0.74	-0.8
1,630,839	+		ABIE53_005359	0.74	-0.0
1,630,839	+		ABIE53_005359	0.74	+1.6
1,630,839	+		ABIE53_005359	0.74	-1.0
1,630,840	-		ABIE53_005359	0.74	+1.6
1,630,840	-		ABIE53_005359	0.74	+1.1
1,630,840	-		ABIE53_005359	0.74	-2.8
1,630,840	-		ABIE53_005359	0.74	+1.6
1,630,840	-		ABIE53_005359	0.74	-0.3
1,631,044	+		ABIE53_005359	0.88	+2.2
1,631,044	+		ABIE53_005359	0.88	-0.1
1,631,045	-		ABIE53_005359	0.88	-0.2
1,631,059	+		ABIE53_005359	0.89	+0.1
1,631,059	+		ABIE53_005359	0.89	+1.0
1,631,059	+		ABIE53_005359	0.89	+1.2
1,631,059	+		ABIE53_005359	0.89	+0.6
1,631,059	+		ABIE53_005359	0.89	-0.8
1,631,059	+		ABIE53_005359	0.89	-2.2
1,631,060	-		ABIE53_005359	0.89	+0.6
1,631,060	-		ABIE53_005359	0.89	-0.8
1,631,060	-		ABIE53_005359	0.89	+0.3
1,631,060	-		ABIE53_005359	0.89	+0.6
1,631,080	+				-0.1
1,631,081	-				+1.9
1,631,114	+				-1.0
1,631,143	+				+0.6
1,631,193	+				-0.4
1,631,194	-				-0.4
1,631,194	-				-0.2
1,631,194	-				-1.3
1,631,194	-				-1.0
1,631,290	+				+0.9
1,631,291	-				+2.1
1,631,291	-				-0.4
1,631,291	-				-1.4
1,631,296	+				-1.3
1,631,296	+				+0.6
1,631,296	+				+0.6
1,631,296	+				+0.1
1,631,297	-				+0.6
1,631,297	-				+1.0
1,631,305	+				-0.4
1,631,306	-				+0.2
1,631,413	+		ABIE53_005360	0.15	+0.3
1,631,414	-		ABIE53_005360	0.15	-0.6
1,631,467	+		ABIE53_005360	0.20	-0.4
1,631,500	+		ABIE53_005360	0.24	+1.6
1,631,501	-		ABIE53_005360	0.24	-1.0
1,631,641	+		ABIE53_005360	0.38	-0.4
1,631,641	+		ABIE53_005360	0.38	-0.4
1,631,641	+		ABIE53_005360	0.38	-0.9
1,631,642	-		ABIE53_005360	0.38	-2.4
1,631,642	-		ABIE53_005360	0.38	-1.0
1,631,642	-		ABIE53_005360	0.38	-2.4
1,631,813	-		ABIE53_005360	0.55	+1.6
1,631,813	-		ABIE53_005360	0.55	+0.1
1,631,813	-		ABIE53_005360	0.55	+1.1
1,631,877	+		ABIE53_005360	0.61	+0.9
1,631,877	+		ABIE53_005360	0.61	+0.2
1,631,946	+		ABIE53_005360	0.68	+0.6
1,632,056	-		ABIE53_005360	0.79	-1.4