Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001320

Experiment: R2A with Clay 500 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Clay 500 g/L
1,477,849	+		ABIE53_001319	0.33	+1.3
1,477,849	+		ABIE53_001319	0.33	-0.1
1,477,850	-		ABIE53_001319	0.33	+0.6
1,477,897	-		ABIE53_001319	0.38	-1.0
1,477,926	-		ABIE53_001319	0.41	+2.6
1,477,926	-		ABIE53_001319	0.41	+0.6
1,477,962	+		ABIE53_001319	0.44	-0.2
1,477,963	-		ABIE53_001319	0.44	-0.8
1,477,963	-		ABIE53_001319	0.44	-0.4
1,477,965	-		ABIE53_001319	0.44	-1.0
1,478,086	+		ABIE53_001319	0.55	+1.9
1,478,086	+		ABIE53_001319	0.55	+2.9
1,478,086	+		ABIE53_001319	0.55	+0.2
1,478,133	-		ABIE53_001319	0.60	-0.4
1,478,133	-		ABIE53_001319	0.60	+0.8
1,478,164	-		ABIE53_001319	0.63	-0.2
1,478,177	-		ABIE53_001319	0.64	+0.7
1,478,347	-		ABIE53_001319	0.80	-2.0
1,478,418	-		ABIE53_001319	0.86	-1.9
1,478,527	+				-0.8
1,478,527	+				+4.0
1,478,528	-				-0.4
1,478,564	+				-0.7
1,478,565	-				-0.1
1,478,610	+				-0.4
1,478,611	-				-2.1
1,478,611	-				-0.1
1,478,611	-				-0.4
1,478,611	-				-1.9
1,478,669	+				-1.4
1,478,669	+				-0.4
1,478,670	-				+0.6
1,478,752	+				-1.0
1,478,797	-				+1.2
1,478,797	-				-0.0
1,478,797	-				-0.5
1,478,881	+		ABIE53_001320	0.23	+0.8
1,478,960	+		ABIE53_001320	0.37	+2.3
1,478,975	-		ABIE53_001320	0.39	+0.6
1,478,975	-		ABIE53_001320	0.39	-0.7
1,478,975	-		ABIE53_001320	0.39	-0.4
1,479,001	-		ABIE53_001320	0.44	-2.0
1,479,082	+		ABIE53_001320	0.58	+1.3
1,479,082	+		ABIE53_001320	0.58	+0.6
1,479,083	-		ABIE53_001320	0.58	-0.2
1,479,083	-		ABIE53_001320	0.58	+0.6
1,479,089	+		ABIE53_001320	0.59	+2.2
1,479,091	+		ABIE53_001320	0.60	+2.0
1,479,122	+		ABIE53_001320	0.65	-0.6
1,479,214	+		ABIE53_001320	0.81	+1.0
1,479,242	-		ABIE53_001320	0.86	+0.7
1,479,277	+				-0.8
1,479,277	+				+1.9
1,479,277	+				-0.1
1,479,278	-				-1.2
1,479,279	+				+1.6
1,479,280	-				+0.6
1,479,280	-				-2.0
1,479,280	-				-1.7
1,479,280	-				-0.4
1,479,315	+				-0.1
1,479,315	+				-0.4
1,479,316	-				-0.4
1,479,317	+				-0.7
1,479,317	+				+0.7
1,479,317	+				-0.6
1,479,317	+				+0.2
1,479,317	+				+0.6
1,479,317	+				-0.6
1,479,318	-				-0.3
1,479,318	-				-2.4
1,479,318	-				+0.5
1,479,318	-				+0.3
1,479,325	+				+1.5
1,479,326	-				+0.6
1,479,326	-				-0.8
1,479,418	+				-1.0
1,479,418	+				+1.8
1,479,443	+				-0.5
1,479,443	+				-2.7
1,479,443	+				+0.8
1,479,443	+				+0.1
1,479,452	+				+0.6
1,479,452	+				+1.6
1,479,498	-				-3.6
1,479,498	-				+1.4
1,479,802	+				+0.6
1,479,846	+				+2.4
1,479,847	-				-0.9
1,480,036	+		ABIE53_001321	0.17	+0.2
1,480,036	+		ABIE53_001321	0.17	-0.1
1,480,036	+		ABIE53_001321	0.17	+0.6
1,480,036	+		ABIE53_001321	0.17	+1.2
1,480,037	-		ABIE53_001321	0.17	+2.7
1,480,037	-		ABIE53_001321	0.17	-0.6
1,480,037	-		ABIE53_001321	0.17	+2.2
1,480,037	-		ABIE53_001321	0.17	+1.6
1,480,037	-		ABIE53_001321	0.17	-0.4
1,480,119	+		ABIE53_001321	0.29	+2.9
1,480,119	+		ABIE53_001321	0.29	-0.2
1,480,120	-		ABIE53_001321	0.29	-1.1
1,480,120	-		ABIE53_001321	0.29	+1.2
1,480,122	+		ABIE53_001321	0.30	-0.4
1,480,122	+		ABIE53_001321	0.30	-1.2