Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00977 and SMc00976 are separated by 9 nucleotides SMc00976 and SMc00975 are separated by 256 nucleotides
SMc00977: SMc00977 - acyl-CoA dehydrogenase, at 960,794 to 962,575
SMc00977
SMc00976: SMc00976 - enoyl-CoA hydratase, at 962,585 to 963,337
SMc00976
SMc00975: SMc00975 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 963,594 to 965,717
SMc00975
Position (kb) 962
963
964 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 961.592 kb on + strand, within SMc00977 at 961.758 kb on - strand, within SMc00977 at 961.892 kb on + strand, within SMc00977 at 962.085 kb on - strand, within SMc00977 at 962.115 kb on - strand, within SMc00977 at 962.408 kb on + strand at 962.408 kb on + strand at 962.408 kb on + strand at 962.408 kb on + strand at 962.621 kb on + strand at 962.687 kb on + strand, within SMc00976 at 962.688 kb on - strand, within SMc00976 at 962.688 kb on - strand, within SMc00976 at 963.335 kb on + strand at 963.394 kb on + strand at 963.394 kb on + strand at 963.395 kb on - strand at 963.395 kb on - strand at 963.421 kb on - strand at 963.421 kb on - strand at 963.705 kb on + strand at 963.706 kb on - strand at 963.706 kb on - strand at 963.707 kb on + strand at 963.922 kb on - strand, within SMc00975 at 964.005 kb on + strand, within SMc00975 at 964.051 kb on - strand, within SMc00975
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 961,592 + SMc00977 0.45 +0.9 961,758 - SMc00977 0.54 -0.1 961,892 + SMc00977 0.62 +0.9 962,085 - SMc00977 0.72 -0.7 962,115 - SMc00977 0.74 +0.7 962,408 + -0.9 962,408 + +0.9 962,408 + -0.8 962,408 + +0.4 962,621 + -0.6 962,687 + SMc00976 0.14 +1.3 962,688 - SMc00976 0.14 +0.1 962,688 - SMc00976 0.14 +1.5 963,335 + -1.7 963,394 + +4.8 963,394 + +0.6 963,395 - -0.7 963,395 - +0.4 963,421 - +0.4 963,421 - +0.2 963,705 + -0.1 963,706 - +0.9 963,706 - +0.1 963,707 + +0.0 963,922 - SMc00975 0.15 -0.1 964,005 + SMc00975 0.19 +0.0 964,051 - SMc00975 0.22 +0.1
Or see this region's nucleotide sequence