Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00768 and SMc00769 are separated by 227 nucleotides SMc00769 and SMc00770 are separated by 344 nucleotides
SMc00768: SMc00768 - isocitrate lyase, at 779,980 to 781,269
SMc00768
SMc00769: SMc00769 - hypothetical protein, at 781,497 to 782,909
SMc00769
SMc00770: SMc00770 - putrescine-binding periplasmic protein, at 783,254 to 784,348
SMc00770
Position (kb) 781
782
783 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 780.507 kb on - strand, within SMc00768 at 780.536 kb on + strand, within SMc00768 at 780.536 kb on + strand, within SMc00768 at 780.537 kb on - strand, within SMc00768 at 780.537 kb on - strand, within SMc00768 at 780.537 kb on - strand, within SMc00768 at 780.974 kb on + strand, within SMc00768 at 781.025 kb on + strand, within SMc00768 at 781.025 kb on + strand, within SMc00768 at 781.025 kb on + strand, within SMc00768 at 781.025 kb on + strand, within SMc00768 at 781.026 kb on - strand, within SMc00768 at 781.026 kb on - strand, within SMc00768 at 781.408 kb on + strand at 781.408 kb on + strand at 781.408 kb on + strand at 781.409 kb on - strand at 781.409 kb on - strand at 781.602 kb on + strand at 781.603 kb on - strand at 781.603 kb on - strand at 781.671 kb on + strand at 781.671 kb on + strand, within SMc00769 at 781.671 kb on + strand, within SMc00769 at 781.672 kb on - strand, within SMc00769 at 781.904 kb on + strand, within SMc00769 at 781.904 kb on + strand, within SMc00769 at 781.905 kb on - strand, within SMc00769 at 781.905 kb on - strand, within SMc00769 at 781.905 kb on - strand, within SMc00769 at 781.905 kb on - strand, within SMc00769 at 781.988 kb on - strand, within SMc00769 at 782.108 kb on + strand, within SMc00769 at 782.108 kb on + strand, within SMc00769 at 782.109 kb on - strand, within SMc00769 at 782.109 kb on - strand, within SMc00769 at 782.265 kb on - strand, within SMc00769 at 782.337 kb on + strand, within SMc00769 at 782.373 kb on + strand, within SMc00769 at 782.374 kb on - strand, within SMc00769 at 782.374 kb on - strand, within SMc00769 at 782.412 kb on + strand, within SMc00769 at 782.413 kb on - strand, within SMc00769 at 782.642 kb on - strand, within SMc00769 at 782.642 kb on - strand, within SMc00769 at 782.754 kb on + strand, within SMc00769 at 782.950 kb on + strand at 782.950 kb on + strand at 782.952 kb on + strand at 782.952 kb on + strand at 782.952 kb on + strand at 782.952 kb on + strand at 782.952 kb on + strand at 782.952 kb on + strand at 782.952 kb on + strand at 782.953 kb on - strand at 782.953 kb on - strand at 782.953 kb on - strand at 782.953 kb on - strand at 783.019 kb on + strand at 783.020 kb on - strand at 783.132 kb on + strand at 783.132 kb on + strand at 783.215 kb on - strand at 783.219 kb on + strand at 783.220 kb on - strand at 783.220 kb on - strand at 783.236 kb on - strand at 783.253 kb on + strand at 783.253 kb on + strand at 783.253 kb on + strand at 783.253 kb on + strand at 783.310 kb on - strand at 783.345 kb on - strand at 783.346 kb on + strand at 783.346 kb on + strand at 783.347 kb on - strand at 783.347 kb on - strand at 783.360 kb on - strand at 783.373 kb on + strand, within SMc00770 at 783.416 kb on + strand, within SMc00770 at 783.416 kb on + strand, within SMc00770 at 783.417 kb on - strand, within SMc00770 at 783.627 kb on - strand, within SMc00770 at 783.638 kb on + strand, within SMc00770 at 783.639 kb on - strand, within SMc00770 at 783.896 kb on - strand, within SMc00770
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 780,507 - SMc00768 0.41 -0.5 780,536 + SMc00768 0.43 -4.9 780,536 + SMc00768 0.43 -3.7 780,537 - SMc00768 0.43 -3.7 780,537 - SMc00768 0.43 -3.8 780,537 - SMc00768 0.43 -3.5 780,974 + SMc00768 0.77 -2.3 781,025 + SMc00768 0.81 -4.2 781,025 + SMc00768 0.81 -0.5 781,025 + SMc00768 0.81 -5.8 781,025 + SMc00768 0.81 -2.9 781,026 - SMc00768 0.81 -3.9 781,026 - SMc00768 0.81 -2.6 781,408 + -3.3 781,408 + -4.4 781,408 + -4.1 781,409 - -2.1 781,409 - -4.9 781,602 + -2.0 781,603 - -4.7 781,603 - -2.4 781,671 + -0.5 781,671 + SMc00769 0.12 -1.8 781,671 + SMc00769 0.12 -0.9 781,672 - SMc00769 0.12 -4.8 781,904 + SMc00769 0.29 -2.5 781,904 + SMc00769 0.29 -0.5 781,905 - SMc00769 0.29 -2.6 781,905 - SMc00769 0.29 -2.2 781,905 - SMc00769 0.29 -3.8 781,905 - SMc00769 0.29 -3.3 781,988 - SMc00769 0.35 -4.7 782,108 + SMc00769 0.43 -3.7 782,108 + SMc00769 0.43 -3.5 782,109 - SMc00769 0.43 -1.8 782,109 - SMc00769 0.43 -4.7 782,265 - SMc00769 0.54 -2.4 782,337 + SMc00769 0.59 -4.6 782,373 + SMc00769 0.62 -0.8 782,374 - SMc00769 0.62 -2.3 782,374 - SMc00769 0.62 -3.5 782,412 + SMc00769 0.65 -2.5 782,413 - SMc00769 0.65 -4.2 782,642 - SMc00769 0.81 -3.3 782,642 - SMc00769 0.81 -4.1 782,754 + SMc00769 0.89 -5.1 782,950 + -1.6 782,950 + +0.3 782,952 + +2.0 782,952 + +0.0 782,952 + -0.3 782,952 + -0.4 782,952 + +0.1 782,952 + -1.1 782,952 + +0.5 782,953 - +0.4 782,953 - -0.6 782,953 - -0.0 782,953 - -0.1 783,019 + +0.4 783,020 - -0.8 783,132 + -1.6 783,132 + +1.5 783,215 - -0.7 783,219 + +1.3 783,220 - +0.1 783,220 - -0.7 783,236 - +0.2 783,253 + -0.4 783,253 + +0.3 783,253 + -0.0 783,253 + -0.3 783,310 - +0.4 783,345 - +0.9 783,346 + -0.7 783,346 + +0.2 783,347 - -0.4 783,347 - -1.8 783,360 - -0.4 783,373 + SMc00770 0.11 +1.7 783,416 + SMc00770 0.15 -0.8 783,416 + SMc00770 0.15 +0.2 783,417 - SMc00770 0.15 -0.6 783,627 - SMc00770 0.34 -1.0 783,638 + SMc00770 0.35 +0.2 783,639 - SMc00770 0.35 -0.8 783,896 - SMc00770 0.59 -0.8
Or see this region's nucleotide sequence