Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00378 and SMc00379 overlap by 1 nucleotides SMc00379 and SMc00380 are separated by 8 nucleotides SMc00380 and SMc00381 are separated by 113 nucleotides
SMc00378: SMc00378 - exodeoxyribonuclease VII large subunit, at 331,801 to 333,381
SMc00378
SMc00379: SMc00379 - oxidoreductase, at 333,381 to 333,971
SMc00379
SMc00380: SMc00380 - transcriptional regulator, at 333,980 to 334,474
SMc00380
SMc00381: SMc00381 - hypothetical protein, at 334,588 to 335,460
SMc00381
Position (kb) 333
334 Strain fitness (log2 ratio) -2
-1
0
1 at 333.163 kb on + strand, within SMc00378 at 333.164 kb on - strand, within SMc00378 at 333.387 kb on - strand at 333.476 kb on + strand at 333.476 kb on + strand, within SMc00379 at 333.547 kb on - strand, within SMc00379 at 333.547 kb on - strand, within SMc00379 at 333.561 kb on + strand, within SMc00379 at 333.758 kb on - strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.936 kb on - strand at 334.463 kb on - strand at 334.514 kb on - strand at 334.556 kb on + strand at 334.594 kb on - strand at 334.637 kb on + strand at 334.637 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.648 kb on - strand at 334.651 kb on + strand at 334.651 kb on + strand at 334.651 kb on + strand at 334.652 kb on - strand at 334.832 kb on + strand, within SMc00381 at 334.859 kb on + strand, within SMc00381 at 334.860 kb on - strand, within SMc00381 at 334.860 kb on - strand, within SMc00381
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 333,163 + SMc00378 0.86 +0.8 333,164 - SMc00378 0.86 -0.4 333,387 - -1.1 333,476 + +0.3 333,476 + SMc00379 0.16 +1.1 333,547 - SMc00379 0.28 +0.1 333,547 - SMc00379 0.28 +0.5 333,561 + SMc00379 0.30 +1.0 333,758 - SMc00379 0.64 +0.1 333,807 + SMc00379 0.72 +0.3 333,807 + SMc00379 0.72 -0.5 333,807 + SMc00379 0.72 +1.4 333,807 + SMc00379 0.72 -0.1 333,936 - -0.1 334,463 - -0.3 334,514 - -0.5 334,556 + -0.9 334,594 - -0.2 334,637 + -0.4 334,637 + +0.4 334,647 + -0.1 334,647 + +0.1 334,647 + -0.7 334,647 + -1.1 334,648 - +0.3 334,651 + -2.0 334,651 + +0.1 334,651 + +0.4 334,652 - +0.7 334,832 + SMc00381 0.28 +0.3 334,859 + SMc00381 0.31 +0.3 334,860 - SMc00381 0.31 -0.3 334,860 - SMc00381 0.31 -0.0
Or see this region's nucleotide sequence