Strain Fitness in Sinorhizobium meliloti 1021 around SMa1658

Experiment: 5-Aminovaleric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1654 and SMa1657 are separated by 408 nucleotidesSMa1657 and SMa1658 are separated by 4 nucleotidesSMa1658 and SMa1660 are separated by 245 nucleotides SMa1654: SMa1654 - GntR family transcriptional regulator, at 924,741 to 925,439 SMa1654 SMa1657: SMa1657 - hypothetical protein, at 925,848 to 926,255 SMa1657 SMa1658: SMa1658 - hypothetical protein, at 926,260 to 926,625 SMa1658 SMa1660: SMa1660 - hypothetical protein, at 926,871 to 927,455 SMa1660 Position (kb) 926 927Strain fitness (log2 ratio) -3 -2 -1 0 1at 925.498 kb on + strandat 925.691 kb on + strandat 925.691 kb on + strandat 925.707 kb on + strandat 925.708 kb on - strandat 925.711 kb on + strandat 925.813 kb on - strandat 925.813 kb on - strandat 925.959 kb on + strand, within SMa1657at 926.004 kb on - strand, within SMa1657at 926.009 kb on + strand, within SMa1657at 926.010 kb on - strand, within SMa1657at 926.010 kb on - strand, within SMa1657at 926.010 kb on - strand, within SMa1657at 926.037 kb on + strand, within SMa1657at 926.053 kb on + strand, within SMa1657at 926.136 kb on - strand, within SMa1657at 926.136 kb on - strand, within SMa1657at 926.234 kb on - strandat 926.262 kb on - strandat 926.269 kb on + strandat 926.544 kb on + strand, within SMa1658at 926.569 kb on + strand, within SMa1658at 926.585 kb on - strand, within SMa1658at 926.614 kb on + strandat 926.735 kb on + strandat 926.752 kb on + strandat 926.752 kb on + strandat 926.752 kb on + strandat 926.752 kb on + strandat 926.753 kb on - strandat 926.764 kb on + strandat 926.765 kb on - strandat 926.765 kb on - strandat 926.765 kb on - strandat 926.852 kb on + strandat 926.886 kb on + strandat 927.098 kb on - strand, within SMa1660at 927.098 kb on - strand, within SMa1660at 927.121 kb on + strand, within SMa1660at 927.253 kb on + strand, within SMa1660at 927.335 kb on - strand, within SMa1660at 927.335 kb on - strand, within SMa1660at 927.368 kb on + strand, within SMa1660at 927.431 kb on + strandat 927.471 kb on + strandat 927.509 kb on - strandat 927.614 kb on + strandat 927.615 kb on - strandat 927.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric (C)
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925,498 + -0.3
925,691 + +0.3
925,691 + -0.7
925,707 + -1.6
925,708 - -0.8
925,711 + +0.6
925,813 - +0.6
925,813 - -1.5
925,959 + SMa1657 0.27 -2.0
926,004 - SMa1657 0.38 -0.3
926,009 + SMa1657 0.39 -0.5
926,010 - SMa1657 0.40 +0.7
926,010 - SMa1657 0.40 +0.1
926,010 - SMa1657 0.40 +0.0
926,037 + SMa1657 0.46 -0.1
926,053 + SMa1657 0.50 +1.1
926,136 - SMa1657 0.71 +0.2
926,136 - SMa1657 0.71 -0.6
926,234 - +1.1
926,262 - -0.8
926,269 + +0.8
926,544 + SMa1658 0.78 -1.0
926,569 + SMa1658 0.84 -1.4
926,585 - SMa1658 0.89 +1.2
926,614 + -1.1
926,735 + +1.7
926,752 + +0.7
926,752 + -0.8
926,752 + -0.2
926,752 + -0.8
926,753 - +0.6
926,764 + +0.7
926,765 - +0.6
926,765 - -0.1
926,765 - -0.4
926,852 + -0.6
926,886 + -0.7
927,098 - SMa1660 0.39 -0.2
927,098 - SMa1660 0.39 -2.8
927,121 + SMa1660 0.43 -0.0
927,253 + SMa1660 0.65 -0.6
927,335 - SMa1660 0.79 -0.4
927,335 - SMa1660 0.79 -0.6
927,368 + SMa1660 0.85 +0.2
927,431 + +0.3
927,471 + -0.3
927,509 - -1.0
927,614 + +0.5
927,615 - -0.3
927,615 - +0.4

Or see this region's nucleotide sequence