Strain Fitness in Sinorhizobium meliloti 1021 around SMa0794

Experiment: 5-Aminovaleric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0792 and SMa0793 overlap by 4 nucleotidesSMa0793 and SMa0794 overlap by 4 nucleotidesSMa0794 and SMa0796 are separated by 5 nucleotides SMa0792: SMa0792 - hypothetical protein, at 431,220 to 432,053 SMa0792 SMa0793: SMa0793 - hypothetical protein, at 432,050 to 432,985 SMa0793 SMa0794: SMa0794 - Monoxygenase, at 432,982 to 434,022 SMa0794 SMa0796: SMa0796 - hypothetical protein, at 434,028 to 435,491 SMa0796 Position (kb) 432 433 434 435Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 431.986 kb on + strandat 431.987 kb on - strandat 432.160 kb on + strand, within SMa0793at 432.175 kb on + strand, within SMa0793at 432.176 kb on - strand, within SMa0793at 432.176 kb on - strand, within SMa0793at 432.236 kb on + strand, within SMa0793at 432.451 kb on - strand, within SMa0793at 432.451 kb on - strand, within SMa0793at 432.451 kb on - strand, within SMa0793at 432.606 kb on + strand, within SMa0793at 432.741 kb on - strand, within SMa0793at 432.874 kb on + strand, within SMa0793at 432.875 kb on - strand, within SMa0793at 432.923 kb on + strandat 433.154 kb on + strand, within SMa0794at 433.182 kb on + strand, within SMa0794at 433.182 kb on + strand, within SMa0794at 433.183 kb on - strand, within SMa0794at 433.312 kb on + strand, within SMa0794at 433.313 kb on - strand, within SMa0794at 433.678 kb on + strand, within SMa0794at 433.678 kb on + strand, within SMa0794at 433.678 kb on + strandat 433.679 kb on - strand, within SMa0794at 433.730 kb on + strand, within SMa0794at 433.730 kb on + strand, within SMa0794at 433.730 kb on + strand, within SMa0794at 433.730 kb on + strand, within SMa0794at 433.730 kb on + strand, within SMa0794at 433.731 kb on - strand, within SMa0794at 433.731 kb on - strand, within SMa0794at 433.731 kb on - strand, within SMa0794at 433.733 kb on - strand, within SMa0794at 433.733 kb on - strand, within SMa0794at 433.736 kb on - strand, within SMa0794at 433.736 kb on - strand, within SMa0794at 433.736 kb on - strand, within SMa0794at 433.736 kb on - strand, within SMa0794at 433.736 kb on - strand, within SMa0794at 433.736 kb on - strand, within SMa0794at 433.741 kb on + strand, within SMa0794at 433.904 kb on - strand, within SMa0794at 433.904 kb on - strand, within SMa0794at 433.904 kb on - strand, within SMa0794at 433.928 kb on - strandat 433.928 kb on - strandat 434.021 kb on - strandat 434.046 kb on + strandat 434.046 kb on + strandat 434.046 kb on + strandat 434.047 kb on - strandat 434.047 kb on - strandat 434.337 kb on + strand, within SMa0796at 434.337 kb on + strand, within SMa0796at 434.349 kb on + strand, within SMa0796at 434.353 kb on - strand, within SMa0796at 434.361 kb on + strand, within SMa0796at 434.394 kb on + strand, within SMa0796at 434.394 kb on + strand, within SMa0796at 434.394 kb on + strand, within SMa0796at 434.394 kb on + strand, within SMa0796at 434.395 kb on - strand, within SMa0796at 434.395 kb on - strand, within SMa0796at 434.693 kb on - strand, within SMa0796at 434.693 kb on - strand, within SMa0796at 434.693 kb on - strand, within SMa0796at 434.726 kb on + strand, within SMa0796at 434.726 kb on + strand, within SMa0796at 434.728 kb on + strand, within SMa0796at 434.728 kb on + strand, within SMa0796at 434.728 kb on + strand, within SMa0796at 434.728 kb on + strand, within SMa0796at 434.728 kb on + strandat 434.728 kb on + strand, within SMa0796at 434.728 kb on + strand, within SMa0796at 434.728 kb on + strand, within SMa0796at 434.729 kb on - strand, within SMa0796at 434.729 kb on - strand, within SMa0796at 434.731 kb on + strand, within SMa0796

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric (C)
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431,986 + -1.5
431,987 - -2.3
432,160 + SMa0793 0.12 -1.3
432,175 + SMa0793 0.13 -1.8
432,176 - SMa0793 0.13 -0.0
432,176 - SMa0793 0.13 +0.2
432,236 + SMa0793 0.20 -0.5
432,451 - SMa0793 0.43 -1.1
432,451 - SMa0793 0.43 +0.5
432,451 - SMa0793 0.43 +0.4
432,606 + SMa0793 0.59 +0.7
432,741 - SMa0793 0.74 +0.5
432,874 + SMa0793 0.88 -1.3
432,875 - SMa0793 0.88 +1.4
432,923 + -1.4
433,154 + SMa0794 0.17 -1.2
433,182 + SMa0794 0.19 +0.1
433,182 + SMa0794 0.19 -0.9
433,183 - SMa0794 0.19 -2.2
433,312 + SMa0794 0.32 +0.1
433,313 - SMa0794 0.32 -0.2
433,678 + SMa0794 0.67 -0.0
433,678 + SMa0794 0.67 -0.8
433,678 + +1.9
433,679 - SMa0794 0.67 -0.3
433,730 + SMa0794 0.72 +0.2
433,730 + SMa0794 0.72 +3.6
433,730 + SMa0794 0.72 -0.6
433,730 + SMa0794 0.72 +0.7
433,730 + SMa0794 0.72 +0.0
433,731 - SMa0794 0.72 -0.2
433,731 - SMa0794 0.72 -0.6
433,731 - SMa0794 0.72 -0.6
433,733 - SMa0794 0.72 +0.1
433,733 - SMa0794 0.72 -0.3
433,736 - SMa0794 0.72 +0.1
433,736 - SMa0794 0.72 -0.1
433,736 - SMa0794 0.72 -0.1
433,736 - SMa0794 0.72 -0.5
433,736 - SMa0794 0.72 +0.2
433,736 - SMa0794 0.72 +0.1
433,741 + SMa0794 0.73 -2.1
433,904 - SMa0794 0.89 +1.5
433,904 - SMa0794 0.89 -0.1
433,904 - SMa0794 0.89 -0.2
433,928 - -0.8
433,928 - +3.5
434,021 - -0.2
434,046 + +0.9
434,046 + -5.0
434,046 + -0.3
434,047 - -0.3
434,047 - +0.3
434,337 + SMa0796 0.21 -0.3
434,337 + SMa0796 0.21 -0.8
434,349 + SMa0796 0.22 -2.0
434,353 - SMa0796 0.22 +0.3
434,361 + SMa0796 0.23 +1.3
434,394 + SMa0796 0.25 -0.9
434,394 + SMa0796 0.25 +0.7
434,394 + SMa0796 0.25 +0.6
434,394 + SMa0796 0.25 -0.0
434,395 - SMa0796 0.25 -0.0
434,395 - SMa0796 0.25 -0.7
434,693 - SMa0796 0.45 -0.3
434,693 - SMa0796 0.45 +0.9
434,693 - SMa0796 0.45 -0.0
434,726 + SMa0796 0.48 -0.0
434,726 + SMa0796 0.48 +0.3
434,728 + SMa0796 0.48 +0.3
434,728 + SMa0796 0.48 -0.7
434,728 + SMa0796 0.48 +1.8
434,728 + SMa0796 0.48 -0.3
434,728 + +1.5
434,728 + SMa0796 0.48 +0.5
434,728 + SMa0796 0.48 -0.1
434,728 + SMa0796 0.48 +0.3
434,729 - SMa0796 0.48 +2.1
434,729 - SMa0796 0.48 -0.9
434,731 + SMa0796 0.48 -0.1

Or see this region's nucleotide sequence