Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21109

Experiment: 5-Aminovaleric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21107 and SM_b21108 are separated by 12 nucleotidesSM_b21108 and SM_b21109 overlap by 8 nucleotidesSM_b21109 and SM_b21110 are separated by 1 nucleotidesSM_b21110 and SM_b21111 overlap by 4 nucleotides SM_b21107: SM_b21107 - dehydratase involved in L-fucose catabolism (from data), at 749,230 to 750,342 _b21107 SM_b21108: SM_b21108 - L-fucose mutarotase (EC 5.1.3.29) (from data), at 750,355 to 750,684 _b21108 SM_b21109: SM_b21109 - L-fucose dehydrogenase (EC 1.1.1.122) (from data), at 750,677 to 751,759 _b21109 SM_b21110: SM_b21110 - dehydratase involved in L-fucose catabolism (from data), at 751,761 to 752,222 _b21110 SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953 _b21111 Position (kb) 750 751 752Strain fitness (log2 ratio) -2 -1 0 1 2 3at 749.761 kb on + strand, within SM_b21107at 749.761 kb on + strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.983 kb on + strand, within SM_b21107at 750.007 kb on + strand, within SM_b21107at 750.008 kb on - strandat 750.008 kb on - strand, within SM_b21107at 750.008 kb on - strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.010 kb on - strand, within SM_b21107at 750.178 kb on + strand, within SM_b21107at 750.179 kb on - strand, within SM_b21107at 750.188 kb on - strand, within SM_b21107at 750.297 kb on - strandat 750.406 kb on + strand, within SM_b21108at 750.406 kb on + strand, within SM_b21108at 750.406 kb on + strand, within SM_b21108at 750.407 kb on - strand, within SM_b21108at 750.476 kb on - strand, within SM_b21108at 750.526 kb on + strand, within SM_b21108at 750.527 kb on - strand, within SM_b21108at 750.527 kb on - strand, within SM_b21108at 750.794 kb on + strand, within SM_b21109at 750.794 kb on + strand, within SM_b21109at 750.795 kb on - strand, within SM_b21109at 750.796 kb on + strand, within SM_b21109at 750.797 kb on - strand, within SM_b21109at 751.000 kb on - strand, within SM_b21109at 751.142 kb on + strand, within SM_b21109at 751.143 kb on - strand, within SM_b21109at 751.143 kb on - strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.257 kb on - strand, within SM_b21109at 751.472 kb on + strand, within SM_b21109at 751.473 kb on - strand, within SM_b21109at 751.473 kb on - strand, within SM_b21109at 751.473 kb on - strand, within SM_b21109at 751.779 kb on + strandat 751.783 kb on - strandat 751.783 kb on - strandat 751.783 kb on - strandat 751.783 kb on - strandat 751.791 kb on + strandat 751.791 kb on + strandat 752.008 kb on - strand, within SM_b21110at 752.008 kb on - strand, within SM_b21110at 752.054 kb on + strand, within SM_b21110at 752.055 kb on - strand, within SM_b21110at 752.213 kb on + strandat 752.213 kb on + strandat 752.214 kb on - strandat 752.254 kb on - strandat 752.274 kb on + strandat 752.274 kb on + strandat 752.275 kb on - strandat 752.275 kb on - strandat 752.714 kb on + strand, within SM_b21111at 752.714 kb on + strand, within SM_b21111at 752.715 kb on - strandat 752.718 kb on + strand, within SM_b21111at 752.718 kb on + strand, within SM_b21111

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric (C)
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749,761 + SM_b21107 0.48 -0.6
749,761 + SM_b21107 0.48 +0.3
749,762 - SM_b21107 0.48 +0.0
749,762 - SM_b21107 0.48 -1.3
749,762 - SM_b21107 0.48 -0.3
749,762 - SM_b21107 0.48 -0.3
749,983 + SM_b21107 0.68 -0.7
750,007 + SM_b21107 0.70 +0.3
750,008 - +1.3
750,008 - SM_b21107 0.70 -0.3
750,008 - SM_b21107 0.70 +0.2
750,009 + SM_b21107 0.70 -0.8
750,009 + SM_b21107 0.70 -0.8
750,010 - SM_b21107 0.70 -0.7
750,178 + SM_b21107 0.85 -1.0
750,179 - SM_b21107 0.85 -0.4
750,188 - SM_b21107 0.86 +0.5
750,297 - +0.3
750,406 + SM_b21108 0.15 -0.8
750,406 + SM_b21108 0.15 -0.5
750,406 + SM_b21108 0.15 +1.1
750,407 - SM_b21108 0.16 -1.1
750,476 - SM_b21108 0.37 -0.3
750,526 + SM_b21108 0.52 +0.9
750,527 - SM_b21108 0.52 -1.2
750,527 - SM_b21108 0.52 -2.5
750,794 + SM_b21109 0.11 +0.4
750,794 + SM_b21109 0.11 +0.9
750,795 - SM_b21109 0.11 -0.1
750,796 + SM_b21109 0.11 +1.1
750,797 - SM_b21109 0.11 +0.3
751,000 - SM_b21109 0.30 +0.0
751,142 + SM_b21109 0.43 -0.3
751,143 - SM_b21109 0.43 +0.4
751,143 - SM_b21109 0.43 +1.0
751,256 + SM_b21109 0.53 +2.9
751,256 + SM_b21109 0.53 -1.0
751,256 + SM_b21109 0.53 -0.3
751,257 - SM_b21109 0.54 +0.8
751,472 + SM_b21109 0.73 -0.3
751,473 - SM_b21109 0.73 +0.2
751,473 - SM_b21109 0.73 +0.5
751,473 - SM_b21109 0.73 -0.3
751,779 + -0.3
751,783 - -0.4
751,783 - -0.5
751,783 - -0.1
751,783 - -0.5
751,791 + -0.8
751,791 + -0.7
752,008 - SM_b21110 0.53 -0.3
752,008 - SM_b21110 0.53 -0.0
752,054 + SM_b21110 0.63 +1.6
752,055 - SM_b21110 0.64 -0.3
752,213 + +1.3
752,213 + -1.2
752,214 - -0.8
752,254 - +0.0
752,274 + -0.3
752,274 + -0.0
752,275 - -0.2
752,275 - +0.4
752,714 + SM_b21111 0.67 +1.1
752,714 + SM_b21111 0.67 -1.1
752,715 - -1.5
752,718 + SM_b21111 0.68 -1.7
752,718 + SM_b21111 0.68 -0.1

Or see this region's nucleotide sequence