Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21091

Experiment: 5-Aminovaleric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21090 and SM_b21091 are separated by 304 nucleotidesSM_b21091 and SM_b21092 are separated by 4 nucleotidesSM_b21092 and SM_b21093 are separated by 24 nucleotides SM_b21090: SM_b21090 - hypothetical protein, at 732,456 to 733,592 _b21090 SM_b21091: SM_b21091 - cell-wall lytic enzyme, muramidase (lysozyme) protein, at 733,897 to 734,907 _b21091 SM_b21092: SM_b21092 - acetyltransferase, at 734,912 to 735,388 _b21092 SM_b21093: SM_b21093 - LysR family transcriptional regulator, at 735,413 to 736,315 _b21093 Position (kb) 733 734 735Strain fitness (log2 ratio) -2 -1 0 1at 732.930 kb on + strand, within SM_b21090at 732.930 kb on + strand, within SM_b21090at 733.134 kb on + strand, within SM_b21090at 733.134 kb on + strand, within SM_b21090at 733.134 kb on + strand, within SM_b21090at 733.134 kb on + strand, within SM_b21090at 733.135 kb on - strand, within SM_b21090at 733.141 kb on - strand, within SM_b21090at 733.150 kb on - strand, within SM_b21090at 733.250 kb on - strand, within SM_b21090at 733.470 kb on + strand, within SM_b21090at 733.471 kb on - strand, within SM_b21090at 733.471 kb on - strand, within SM_b21090at 733.670 kb on - strandat 733.670 kb on - strandat 733.670 kb on - strandat 733.733 kb on + strandat 735.125 kb on + strand, within SM_b21092at 735.170 kb on + strand, within SM_b21092at 735.171 kb on - strand, within SM_b21092at 735.305 kb on + strand, within SM_b21092at 735.306 kb on - strand, within SM_b21092at 735.323 kb on - strand, within SM_b21092at 735.577 kb on + strand, within SM_b21093at 735.639 kb on + strand, within SM_b21093at 735.640 kb on - strand, within SM_b21093at 735.640 kb on - strand, within SM_b21093at 735.640 kb on - strand, within SM_b21093at 735.702 kb on + strand, within SM_b21093at 735.703 kb on - strand, within SM_b21093at 735.703 kb on - strand, within SM_b21093at 735.792 kb on + strand, within SM_b21093at 735.792 kb on + strand, within SM_b21093at 735.793 kb on - strand, within SM_b21093at 735.834 kb on + strand, within SM_b21093at 735.834 kb on + strand, within SM_b21093at 735.834 kb on + strandat 735.834 kb on + strand, within SM_b21093at 735.834 kb on + strand, within SM_b21093at 735.834 kb on + strand, within SM_b21093at 735.835 kb on - strand, within SM_b21093at 735.878 kb on + strand, within SM_b21093at 735.878 kb on + strand, within SM_b21093at 735.879 kb on - strand, within SM_b21093

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric (C)
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732,930 + SM_b21090 0.42 +0.7
732,930 + SM_b21090 0.42 +0.4
733,134 + SM_b21090 0.60 -1.2
733,134 + SM_b21090 0.60 -0.7
733,134 + SM_b21090 0.60 +0.6
733,134 + SM_b21090 0.60 +0.4
733,135 - SM_b21090 0.60 +0.3
733,141 - SM_b21090 0.60 -1.8
733,150 - SM_b21090 0.61 +0.4
733,250 - SM_b21090 0.70 -1.0
733,470 + SM_b21090 0.89 +0.4
733,471 - SM_b21090 0.89 +0.6
733,471 - SM_b21090 0.89 +0.0
733,670 - +0.5
733,670 - -0.1
733,670 - +0.1
733,733 + -0.5
735,125 + SM_b21092 0.45 +1.2
735,170 + SM_b21092 0.54 +0.7
735,171 - SM_b21092 0.54 +0.3
735,305 + SM_b21092 0.82 -0.1
735,306 - SM_b21092 0.83 +0.7
735,323 - SM_b21092 0.86 +0.4
735,577 + SM_b21093 0.18 +0.8
735,639 + SM_b21093 0.25 +0.2
735,640 - SM_b21093 0.25 -0.2
735,640 - SM_b21093 0.25 -0.1
735,640 - SM_b21093 0.25 +0.1
735,702 + SM_b21093 0.32 -0.0
735,703 - SM_b21093 0.32 -0.6
735,703 - SM_b21093 0.32 -0.2
735,792 + SM_b21093 0.42 -0.8
735,792 + SM_b21093 0.42 -1.4
735,793 - SM_b21093 0.42 +0.3
735,834 + SM_b21093 0.47 -0.8
735,834 + SM_b21093 0.47 -0.2
735,834 + -0.6
735,834 + SM_b21093 0.47 -1.0
735,834 + SM_b21093 0.47 +0.1
735,834 + SM_b21093 0.47 +0.8
735,835 - SM_b21093 0.47 -0.0
735,878 + SM_b21093 0.51 +0.7
735,878 + SM_b21093 0.51 +0.1
735,879 - SM_b21093 0.52 -0.4

Or see this region's nucleotide sequence