Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20246 and SM_b20247 are separated by 4 nucleotides SM_b20247 and SM_b20248 are separated by 29 nucleotides
SM_b20246: SM_b20246 - oxidoreductase, at 251,298 to 252,290
_b20246
SM_b20247: SM_b20247 - oxidoreductase, at 252,295 to 253,308
_b20247
SM_b20248: SM_b20248 - hypothetical protein, at 253,338 to 255,086
_b20248
Position (kb) 252
253
254 Strain fitness (log2 ratio) -1
0
1
2 at 251.312 kb on - strand at 251.312 kb on - strand at 251.371 kb on + strand at 251.452 kb on + strand, within SM_b20246 at 251.592 kb on + strand, within SM_b20246 at 251.593 kb on - strand, within SM_b20246 at 251.601 kb on + strand, within SM_b20246 at 251.602 kb on - strand, within SM_b20246 at 251.813 kb on - strand, within SM_b20246 at 252.236 kb on + strand at 252.697 kb on + strand, within SM_b20247 at 252.698 kb on - strand, within SM_b20247 at 252.787 kb on + strand, within SM_b20247 at 252.879 kb on - strand, within SM_b20247 at 252.879 kb on - strand, within SM_b20247 at 252.879 kb on - strand, within SM_b20247 at 252.973 kb on + strand, within SM_b20247 at 253.075 kb on + strand, within SM_b20247 at 253.075 kb on + strand, within SM_b20247 at 253.076 kb on - strand, within SM_b20247 at 253.101 kb on + strand, within SM_b20247 at 253.121 kb on - strand, within SM_b20247 at 253.297 kb on + strand at 253.307 kb on - strand at 253.340 kb on - strand at 253.340 kb on - strand at 253.375 kb on + strand at 253.465 kb on + strand at 253.891 kb on + strand, within SM_b20248 at 254.179 kb on - strand, within SM_b20248
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 251,312 - +0.3 251,312 - -0.2 251,371 + +1.6 251,452 + SM_b20246 0.16 -0.4 251,592 + SM_b20246 0.30 +1.3 251,593 - SM_b20246 0.30 +0.2 251,601 + SM_b20246 0.31 -1.0 251,602 - SM_b20246 0.31 -0.4 251,813 - SM_b20246 0.52 +0.9 252,236 + -0.3 252,697 + SM_b20247 0.40 +0.6 252,698 - SM_b20247 0.40 -0.1 252,787 + SM_b20247 0.49 +0.1 252,879 - SM_b20247 0.58 +0.5 252,879 - SM_b20247 0.58 -0.8 252,879 - SM_b20247 0.58 -0.7 252,973 + SM_b20247 0.67 +0.4 253,075 + SM_b20247 0.77 -0.6 253,075 + SM_b20247 0.77 -0.8 253,076 - SM_b20247 0.77 +2.1 253,101 + SM_b20247 0.79 +0.0 253,121 - SM_b20247 0.81 -0.5 253,297 + -0.8 253,307 - -0.2 253,340 - +0.2 253,340 - -0.3 253,375 + +0.3 253,465 + -0.7 253,891 + SM_b20248 0.32 +0.0 254,179 - SM_b20248 0.48 +0.9
Or see this region's nucleotide sequence