Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20245 and SM_b20246 are separated by 333 nucleotides SM_b20246 and SM_b20247 are separated by 4 nucleotides
SM_b20245: SM_b20245 - UDP-glucose 4-epimerase, at 249,858 to 250,964
_b20245
SM_b20246: SM_b20246 - oxidoreductase, at 251,298 to 252,290
_b20246
SM_b20247: SM_b20247 - oxidoreductase, at 252,295 to 253,308
_b20247
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1
2 at 250.305 kb on - strand, within SM_b20245 at 250.307 kb on - strand, within SM_b20245 at 250.307 kb on - strand, within SM_b20245 at 250.389 kb on + strand, within SM_b20245 at 250.389 kb on + strand, within SM_b20245 at 250.391 kb on + strand, within SM_b20245 at 250.391 kb on + strand, within SM_b20245 at 250.392 kb on - strand, within SM_b20245 at 250.414 kb on + strand, within SM_b20245 at 250.415 kb on - strand, within SM_b20245 at 250.415 kb on - strand, within SM_b20245 at 250.430 kb on - strand, within SM_b20245 at 250.571 kb on + strand, within SM_b20245 at 250.571 kb on + strand, within SM_b20245 at 250.571 kb on + strand, within SM_b20245 at 250.572 kb on - strand, within SM_b20245 at 250.580 kb on - strand, within SM_b20245 at 250.580 kb on - strand, within SM_b20245 at 250.580 kb on - strand, within SM_b20245 at 250.794 kb on + strand, within SM_b20245 at 250.794 kb on + strand, within SM_b20245 at 250.794 kb on + strand, within SM_b20245 at 250.795 kb on - strand, within SM_b20245 at 250.888 kb on + strand at 250.888 kb on + strand at 250.888 kb on + strand at 250.888 kb on + strand at 250.889 kb on - strand at 250.889 kb on - strand at 250.889 kb on - strand at 250.889 kb on - strand at 250.953 kb on + strand at 250.953 kb on + strand at 250.964 kb on + strand at 250.964 kb on + strand at 250.965 kb on - strand at 250.994 kb on - strand at 251.102 kb on - strand at 251.312 kb on - strand at 251.312 kb on - strand at 251.371 kb on + strand at 251.452 kb on + strand, within SM_b20246 at 251.592 kb on + strand, within SM_b20246 at 251.593 kb on - strand, within SM_b20246 at 251.601 kb on + strand, within SM_b20246 at 251.602 kb on - strand, within SM_b20246 at 251.813 kb on - strand, within SM_b20246 at 252.236 kb on + strand at 252.697 kb on + strand, within SM_b20247 at 252.698 kb on - strand, within SM_b20247 at 252.787 kb on + strand, within SM_b20247 at 252.879 kb on - strand, within SM_b20247 at 252.879 kb on - strand, within SM_b20247 at 252.879 kb on - strand, within SM_b20247 at 252.973 kb on + strand, within SM_b20247 at 253.075 kb on + strand, within SM_b20247 at 253.075 kb on + strand, within SM_b20247 at 253.076 kb on - strand, within SM_b20247 at 253.101 kb on + strand, within SM_b20247 at 253.121 kb on - strand, within SM_b20247
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 250,305 - SM_b20245 0.40 -1.0 250,307 - SM_b20245 0.41 -0.1 250,307 - SM_b20245 0.41 -0.4 250,389 + SM_b20245 0.48 +0.4 250,389 + SM_b20245 0.48 -0.6 250,391 + SM_b20245 0.48 -0.6 250,391 + SM_b20245 0.48 +0.2 250,392 - SM_b20245 0.48 -2.1 250,414 + SM_b20245 0.50 +0.3 250,415 - SM_b20245 0.50 -0.3 250,415 - SM_b20245 0.50 +0.6 250,430 - SM_b20245 0.52 -0.4 250,571 + SM_b20245 0.64 +0.7 250,571 + SM_b20245 0.64 -0.4 250,571 + SM_b20245 0.64 -0.0 250,572 - SM_b20245 0.64 -0.2 250,580 - SM_b20245 0.65 -0.2 250,580 - SM_b20245 0.65 -0.7 250,580 - SM_b20245 0.65 -1.3 250,794 + SM_b20245 0.85 +0.3 250,794 + SM_b20245 0.85 -0.1 250,794 + SM_b20245 0.85 +0.5 250,795 - SM_b20245 0.85 -0.6 250,888 + +0.2 250,888 + +0.2 250,888 + +0.6 250,888 + -0.9 250,889 - -0.1 250,889 - +1.0 250,889 - +0.5 250,889 - -0.3 250,953 + -1.9 250,953 + +0.3 250,964 + +0.8 250,964 + -0.9 250,965 - +0.0 250,994 - -1.9 251,102 - -2.2 251,312 - +0.3 251,312 - -0.2 251,371 + +1.6 251,452 + SM_b20246 0.16 -0.4 251,592 + SM_b20246 0.30 +1.3 251,593 - SM_b20246 0.30 +0.2 251,601 + SM_b20246 0.31 -1.0 251,602 - SM_b20246 0.31 -0.4 251,813 - SM_b20246 0.52 +0.9 252,236 + -0.3 252,697 + SM_b20247 0.40 +0.6 252,698 - SM_b20247 0.40 -0.1 252,787 + SM_b20247 0.49 +0.1 252,879 - SM_b20247 0.58 +0.5 252,879 - SM_b20247 0.58 -0.8 252,879 - SM_b20247 0.58 -0.7 252,973 + SM_b20247 0.67 +0.4 253,075 + SM_b20247 0.77 -0.6 253,075 + SM_b20247 0.77 -0.8 253,076 - SM_b20247 0.77 +2.1 253,101 + SM_b20247 0.79 +0.0 253,121 - SM_b20247 0.81 -0.5
Or see this region's nucleotide sequence