Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20186 and SM_b20194 are separated by 311 nucleotides SM_b20194 and SM_b20195 are separated by 3 nucleotides SM_b20195 and SM_b20196 overlap by 4 nucleotides
SM_b20186: SM_b20186 - glutathione-dependent formaldehyde-activating protein, at 202,255 to 202,824
_b20186
SM_b20194: SM_b20194 - hypothetical protein, at 203,136 to 203,702
_b20194
SM_b20195: SM_b20195 - pentose-5-phosphate-3-epimerase, at 203,706 to 204,392
_b20195
SM_b20196: SM_b20196 - CbbX protein, at 204,389 to 205,324
_b20196
Position (kb) 203
204 Strain fitness (log2 ratio) -2
-1
0
1
2 at 202.146 kb on - strand at 202.146 kb on - strand at 202.185 kb on + strand at 202.265 kb on + strand at 202.558 kb on + strand, within SM_b20186 at 202.559 kb on - strand, within SM_b20186 at 202.559 kb on - strand, within SM_b20186 at 202.559 kb on - strand, within SM_b20186 at 202.559 kb on - strand, within SM_b20186 at 202.559 kb on - strand, within SM_b20186 at 202.592 kb on - strand, within SM_b20186 at 202.712 kb on + strand, within SM_b20186 at 202.975 kb on + strand at 203.056 kb on + strand at 203.057 kb on - strand at 203.178 kb on + strand at 203.239 kb on + strand, within SM_b20194 at 203.395 kb on + strand, within SM_b20194 at 203.395 kb on + strand, within SM_b20194 at 203.458 kb on + strand, within SM_b20194 at 203.557 kb on + strand, within SM_b20194 at 203.576 kb on + strand, within SM_b20194 at 203.576 kb on + strand, within SM_b20194 at 203.617 kb on - strand, within SM_b20194 at 203.693 kb on + strand at 203.767 kb on + strand at 203.768 kb on - strand at 203.877 kb on + strand, within SM_b20195 at 204.011 kb on - strand, within SM_b20195 at 204.011 kb on - strand, within SM_b20195 at 204.011 kb on - strand, within SM_b20195 at 204.163 kb on + strand, within SM_b20195 at 204.291 kb on + strand, within SM_b20195 at 204.291 kb on + strand, within SM_b20195 at 204.292 kb on - strand, within SM_b20195 at 204.603 kb on + strand, within SM_b20196 at 204.603 kb on + strand, within SM_b20196 at 204.603 kb on + strand, within SM_b20196 at 204.692 kb on - strand, within SM_b20196
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 202,146 - +0.4 202,146 - -0.1 202,185 + -0.5 202,265 + +1.9 202,558 + SM_b20186 0.53 +0.0 202,559 - SM_b20186 0.53 -0.1 202,559 - SM_b20186 0.53 +0.1 202,559 - SM_b20186 0.53 +0.7 202,559 - SM_b20186 0.53 +0.6 202,559 - SM_b20186 0.53 +0.1 202,592 - SM_b20186 0.59 +0.0 202,712 + SM_b20186 0.80 -1.2 202,975 + +0.0 203,056 + +1.4 203,057 - -0.2 203,178 + -0.9 203,239 + SM_b20194 0.18 -2.2 203,395 + SM_b20194 0.46 +0.7 203,395 + SM_b20194 0.46 +0.3 203,458 + SM_b20194 0.57 -0.3 203,557 + SM_b20194 0.74 +1.0 203,576 + SM_b20194 0.78 +0.1 203,576 + SM_b20194 0.78 +2.1 203,617 - SM_b20194 0.85 +0.2 203,693 + +0.2 203,767 + +0.3 203,768 - -0.3 203,877 + SM_b20195 0.25 -0.4 204,011 - SM_b20195 0.44 +0.4 204,011 - SM_b20195 0.44 -0.1 204,011 - SM_b20195 0.44 -1.2 204,163 + SM_b20195 0.67 +0.0 204,291 + SM_b20195 0.85 -0.7 204,291 + SM_b20195 0.85 +2.0 204,292 - SM_b20195 0.85 -0.3 204,603 + SM_b20196 0.23 -0.8 204,603 + SM_b20196 0.23 -0.2 204,603 + SM_b20196 0.23 +0.9 204,692 - SM_b20196 0.32 -0.3
Or see this region's nucleotide sequence