Experiment: KB with Piperic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2635 and Psyr_2636 are separated by 96 nucleotides Psyr_2636 and Psyr_2637 are separated by 368 nucleotides
Psyr_2635: Psyr_2635 - conserved hypothetical protein, at 3,201,692 to 3,202,870
_2635
Psyr_2636: Psyr_2636 - TspO/MBR-related protein, at 3,202,967 to 3,203,407
_2636
Psyr_2637: Psyr_2637 - FAD dependent oxidoreductase, at 3,203,776 to 3,205,101
_2637
Position (kb) 3202
3203
3204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 3202.189 kb on + strand, within Psyr_2635 at 3202.190 kb on - strand, within Psyr_2635 at 3202.477 kb on + strand, within Psyr_2635 at 3202.477 kb on + strand, within Psyr_2635 at 3202.599 kb on + strand, within Psyr_2635 at 3202.600 kb on - strand, within Psyr_2635 at 3202.676 kb on + strand, within Psyr_2635 at 3202.676 kb on + strand, within Psyr_2635 at 3202.676 kb on + strand, within Psyr_2635 at 3202.676 kb on + strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.794 kb on + strand at 3202.928 kb on + strand at 3202.929 kb on - strand at 3202.929 kb on - strand at 3202.964 kb on + strand at 3202.964 kb on + strand at 3202.965 kb on - strand at 3203.075 kb on + strand, within Psyr_2636 at 3203.170 kb on + strand, within Psyr_2636 at 3203.170 kb on + strand, within Psyr_2636 at 3203.171 kb on - strand, within Psyr_2636 at 3203.171 kb on - strand, within Psyr_2636 at 3203.171 kb on - strand, within Psyr_2636 at 3203.171 kb on - strand, within Psyr_2636 at 3203.385 kb on - strand at 3203.430 kb on + strand at 3203.431 kb on - strand at 3203.431 kb on - strand at 3203.431 kb on - strand at 3203.605 kb on - strand at 3203.611 kb on + strand at 3203.611 kb on + strand at 3203.612 kb on - strand at 3203.612 kb on - strand at 3203.623 kb on + strand at 3203.653 kb on + strand at 3203.654 kb on - strand at 3203.654 kb on - strand at 3203.654 kb on - strand at 3203.657 kb on - strand at 3203.734 kb on - strand at 3203.802 kb on + strand at 3203.802 kb on + strand at 3203.802 kb on + strand at 3203.802 kb on + strand at 3203.803 kb on - strand at 3203.803 kb on - strand at 3203.803 kb on - strand at 3203.875 kb on + strand at 3203.876 kb on - strand at 3203.878 kb on + strand at 3203.879 kb on - strand at 3204.083 kb on - strand, within Psyr_2637
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperic 10 mM remove 3,202,189 + Psyr_2635 0.42 -0.1 3,202,190 - Psyr_2635 0.42 -1.1 3,202,477 + Psyr_2635 0.67 -0.6 3,202,477 + Psyr_2635 0.67 -0.1 3,202,599 + Psyr_2635 0.77 +0.4 3,202,600 - Psyr_2635 0.77 -0.3 3,202,676 + Psyr_2635 0.83 -2.1 3,202,676 + Psyr_2635 0.83 -1.6 3,202,676 + Psyr_2635 0.83 -0.6 3,202,676 + Psyr_2635 0.83 +2.4 3,202,677 - Psyr_2635 0.84 +0.8 3,202,677 - Psyr_2635 0.84 +0.4 3,202,677 - Psyr_2635 0.84 -1.3 3,202,677 - Psyr_2635 0.84 +0.1 3,202,677 - Psyr_2635 0.84 -1.2 3,202,677 - Psyr_2635 0.84 -1.7 3,202,794 + -0.3 3,202,928 + +3.4 3,202,929 - +1.0 3,202,929 - -2.1 3,202,964 + +0.9 3,202,964 + +1.4 3,202,965 - +0.2 3,203,075 + Psyr_2636 0.24 -1.1 3,203,170 + Psyr_2636 0.46 -0.7 3,203,170 + Psyr_2636 0.46 -1.4 3,203,171 - Psyr_2636 0.46 -0.6 3,203,171 - Psyr_2636 0.46 -1.4 3,203,171 - Psyr_2636 0.46 +0.2 3,203,171 - Psyr_2636 0.46 +0.3 3,203,385 - +4.9 3,203,430 + +2.4 3,203,431 - +0.8 3,203,431 - -0.1 3,203,431 - +2.1 3,203,605 - +1.4 3,203,611 + -0.0 3,203,611 + -0.9 3,203,612 - +0.6 3,203,612 - -0.1 3,203,623 + -0.2 3,203,653 + -0.4 3,203,654 - +0.8 3,203,654 - +1.2 3,203,654 - -0.3 3,203,657 - +1.4 3,203,734 - +0.4 3,203,802 + -1.4 3,203,802 + +0.6 3,203,802 + -2.7 3,203,802 + +1.4 3,203,803 - -0.3 3,203,803 - -1.6 3,203,803 - -3.3 3,203,875 + +0.7 3,203,876 - +0.4 3,203,878 + -0.8 3,203,879 - +0.1 3,204,083 - Psyr_2637 0.23 -0.3
Or see this region's nucleotide sequence