Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0962

Experiment: KB with Piperic 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0961 and Psyr_0962 are separated by 9 nucleotidesPsyr_0962 and Psyr_0963 are separated by 3 nucleotides Psyr_0961: Psyr_0961 - deoxyribodipyrimidine photo-lyase type I, at 1,094,638 to 1,096,086 _0961 Psyr_0962: Psyr_0962 - transcriptional regulator, MerR family, at 1,096,096 to 1,096,998 _0962 Psyr_0963: Psyr_0963 - Protein of unknown function DUF523, at 1,097,002 to 1,097,958 _0963 Position (kb) 1096 1097Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1095.232 kb on - strand, within Psyr_0961at 1095.234 kb on - strand, within Psyr_0961at 1095.234 kb on - strand, within Psyr_0961at 1095.247 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.363 kb on - strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.417 kb on - strand, within Psyr_0961at 1095.417 kb on - strand, within Psyr_0961at 1095.417 kb on - strand, within Psyr_0961at 1095.417 kb on - strand, within Psyr_0961at 1095.419 kb on + strand, within Psyr_0961at 1095.419 kb on + strand, within Psyr_0961at 1095.419 kb on + strand, within Psyr_0961at 1095.420 kb on - strand, within Psyr_0961at 1095.420 kb on - strand, within Psyr_0961at 1095.420 kb on - strand, within Psyr_0961at 1095.420 kb on - strand, within Psyr_0961at 1095.510 kb on + strand, within Psyr_0961at 1095.617 kb on + strand, within Psyr_0961at 1095.618 kb on - strand, within Psyr_0961at 1095.618 kb on - strand, within Psyr_0961at 1095.618 kb on - strand, within Psyr_0961at 1095.643 kb on + strand, within Psyr_0961at 1095.643 kb on + strand, within Psyr_0961at 1095.653 kb on + strand, within Psyr_0961at 1095.653 kb on + strand, within Psyr_0961at 1095.653 kb on + strand, within Psyr_0961at 1095.653 kb on + strand, within Psyr_0961at 1095.654 kb on - strand, within Psyr_0961at 1095.691 kb on + strand, within Psyr_0961at 1095.692 kb on - strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.708 kb on - strand, within Psyr_0961at 1095.783 kb on - strand, within Psyr_0961at 1095.943 kb on + strandat 1095.943 kb on + strandat 1095.943 kb on + strandat 1095.943 kb on + strandat 1095.944 kb on - strandat 1095.996 kb on - strandat 1096.097 kb on + strandat 1096.097 kb on + strandat 1096.097 kb on + strandat 1096.097 kb on + strandat 1096.097 kb on + strandat 1096.098 kb on - strandat 1096.098 kb on - strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.165 kb on + strandat 1096.165 kb on + strandat 1096.166 kb on - strandat 1096.166 kb on - strandat 1096.166 kb on - strandat 1096.181 kb on - strandat 1096.181 kb on - strandat 1096.197 kb on + strand, within Psyr_0962at 1096.242 kb on + strand, within Psyr_0962at 1096.293 kb on - strand, within Psyr_0962at 1096.293 kb on - strand, within Psyr_0962at 1096.293 kb on - strand, within Psyr_0962at 1096.300 kb on + strand, within Psyr_0962at 1096.300 kb on + strand, within Psyr_0962at 1096.300 kb on + strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.320 kb on - strand, within Psyr_0962at 1096.320 kb on - strand, within Psyr_0962at 1096.320 kb on - strand, within Psyr_0962at 1096.490 kb on + strand, within Psyr_0962at 1096.490 kb on + strand, within Psyr_0962at 1096.490 kb on + strand, within Psyr_0962at 1096.491 kb on - strand, within Psyr_0962at 1096.491 kb on - strand, within Psyr_0962at 1096.491 kb on - strand, within Psyr_0962at 1096.491 kb on - strand, within Psyr_0962at 1096.632 kb on - strand, within Psyr_0962at 1096.847 kb on + strand, within Psyr_0962at 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.066 kb on + strandat 1097.067 kb on - strandat 1097.067 kb on - strandat 1097.185 kb on - strand, within Psyr_0963at 1097.185 kb on - strand, within Psyr_0963at 1097.201 kb on + strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.283 kb on - strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strandat 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.348 kb on + strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.349 kb on - strand, within Psyr_0963at 1097.384 kb on + strand, within Psyr_0963at 1097.453 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.558 kb on + strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.559 kb on - strand, within Psyr_0963at 1097.654 kb on + strand, within Psyr_0963at 1097.655 kb on - strand, within Psyr_0963at 1097.689 kb on + strand, within Psyr_0963at 1097.689 kb on + strand, within Psyr_0963at 1097.689 kb on + strand, within Psyr_0963at 1097.689 kb on + strand, within Psyr_0963at 1097.690 kb on - strand, within Psyr_0963at 1097.690 kb on - strand, within Psyr_0963at 1097.690 kb on - strand, within Psyr_0963at 1097.843 kb on + strand, within Psyr_0963at 1097.843 kb on + strand, within Psyr_0963at 1097.844 kb on - strand, within Psyr_0963at 1097.862 kb on + strand, within Psyr_0963at 1097.863 kb on - strandat 1097.863 kb on - strandat 1097.975 kb on + strandat 1097.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Piperic 10 mM
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1,095,232 - Psyr_0961 0.41 +0.4
1,095,234 - Psyr_0961 0.41 +1.6
1,095,234 - Psyr_0961 0.41 +2.7
1,095,247 + Psyr_0961 0.42 -0.4
1,095,250 + Psyr_0961 0.42 +0.0
1,095,250 + Psyr_0961 0.42 +0.6
1,095,250 + Psyr_0961 0.42 +1.2
1,095,250 + Psyr_0961 0.42 -1.6
1,095,250 + Psyr_0961 0.42 -0.0
1,095,250 + Psyr_0961 0.42 +0.2
1,095,250 + Psyr_0961 0.42 +0.1
1,095,250 + Psyr_0961 0.42 +0.4
1,095,251 - Psyr_0961 0.42 -0.9
1,095,251 - Psyr_0961 0.42 -0.4
1,095,251 - Psyr_0961 0.42 -0.5
1,095,251 - Psyr_0961 0.42 -0.6
1,095,251 - Psyr_0961 0.42 -0.3
1,095,251 - Psyr_0961 0.42 -0.6
1,095,251 - Psyr_0961 0.42 +0.6
1,095,251 - Psyr_0961 0.42 -0.3
1,095,251 - Psyr_0961 0.42 +0.1
1,095,251 - Psyr_0961 0.42 +0.2
1,095,251 - Psyr_0961 0.42 +1.2
1,095,251 - Psyr_0961 0.42 -0.8
1,095,363 - Psyr_0961 0.50 -0.5
1,095,416 + Psyr_0961 0.54 -2.7
1,095,416 + Psyr_0961 0.54 -1.8
1,095,416 + Psyr_0961 0.54 -0.5
1,095,416 + Psyr_0961 0.54 -0.2
1,095,416 + Psyr_0961 0.54 +0.2
1,095,416 + Psyr_0961 0.54 +0.8
1,095,416 + Psyr_0961 0.54 +1.2
1,095,416 + Psyr_0961 0.54 +0.8
1,095,417 - Psyr_0961 0.54 -2.4
1,095,417 - Psyr_0961 0.54 +0.6
1,095,417 - Psyr_0961 0.54 -0.3
1,095,417 - Psyr_0961 0.54 -1.5
1,095,419 + Psyr_0961 0.54 -1.1
1,095,419 + Psyr_0961 0.54 +0.3
1,095,419 + Psyr_0961 0.54 -0.3
1,095,420 - Psyr_0961 0.54 +0.9
1,095,420 - Psyr_0961 0.54 -2.9
1,095,420 - Psyr_0961 0.54 +0.1
1,095,420 - Psyr_0961 0.54 +0.3
1,095,510 + Psyr_0961 0.60 -0.7
1,095,617 + Psyr_0961 0.68 +1.0
1,095,618 - Psyr_0961 0.68 +1.2
1,095,618 - Psyr_0961 0.68 +0.2
1,095,618 - Psyr_0961 0.68 +0.3
1,095,643 + Psyr_0961 0.69 +0.2
1,095,643 + Psyr_0961 0.69 +0.4
1,095,653 + Psyr_0961 0.70 +1.9
1,095,653 + Psyr_0961 0.70 +0.8
1,095,653 + Psyr_0961 0.70 +1.7
1,095,653 + Psyr_0961 0.70 +0.2
1,095,654 - Psyr_0961 0.70 -0.1
1,095,691 + Psyr_0961 0.73 +0.3
1,095,692 - Psyr_0961 0.73 -1.5
1,095,707 + Psyr_0961 0.74 +1.8
1,095,707 + Psyr_0961 0.74 -1.4
1,095,707 + Psyr_0961 0.74 +0.4
1,095,707 + Psyr_0961 0.74 -0.7
1,095,707 + Psyr_0961 0.74 -0.6
1,095,708 - Psyr_0961 0.74 -0.5
1,095,783 - Psyr_0961 0.79 +0.5
1,095,943 + -0.4
1,095,943 + -1.0
1,095,943 + -1.2
1,095,943 + -0.3
1,095,944 - -0.8
1,095,996 - -2.1
1,096,097 + -0.1
1,096,097 + -0.9
1,096,097 + -0.1
1,096,097 + -0.4
1,096,097 + -0.9
1,096,098 - -1.0
1,096,098 - +0.1
1,096,101 + -1.3
1,096,101 + -1.4
1,096,101 + -0.8
1,096,101 + -0.2
1,096,101 + +1.2
1,096,101 + -0.1
1,096,101 + -0.6
1,096,101 + +0.4
1,096,101 + -0.0
1,096,101 + -0.5
1,096,102 - -1.1
1,096,102 - +0.5
1,096,102 - -0.3
1,096,102 - +1.0
1,096,102 - -0.6
1,096,102 - -2.5
1,096,102 - -0.8
1,096,165 + -0.8
1,096,165 + +0.2
1,096,166 - -0.5
1,096,166 - +1.3
1,096,166 - -1.1
1,096,181 - +0.5
1,096,181 - +0.1
1,096,197 + Psyr_0962 0.11 -0.2
1,096,242 + Psyr_0962 0.16 +0.7
1,096,293 - Psyr_0962 0.22 +1.0
1,096,293 - Psyr_0962 0.22 +0.5
1,096,293 - Psyr_0962 0.22 -0.0
1,096,300 + Psyr_0962 0.23 -2.0
1,096,300 + Psyr_0962 0.23 +2.8
1,096,300 + Psyr_0962 0.23 -0.5
1,096,301 - Psyr_0962 0.23 +1.2
1,096,301 - Psyr_0962 0.23 +2.0
1,096,301 - Psyr_0962 0.23 -2.2
1,096,301 - Psyr_0962 0.23 +0.0
1,096,301 - Psyr_0962 0.23 -3.1
1,096,320 - Psyr_0962 0.25 +1.6
1,096,320 - Psyr_0962 0.25 +1.0
1,096,320 - Psyr_0962 0.25 -1.3
1,096,490 + Psyr_0962 0.44 +0.2
1,096,490 + Psyr_0962 0.44 -0.5
1,096,490 + Psyr_0962 0.44 +0.7
1,096,491 - Psyr_0962 0.44 +0.3
1,096,491 - Psyr_0962 0.44 +0.8
1,096,491 - Psyr_0962 0.44 +0.4
1,096,491 - Psyr_0962 0.44 +0.9
1,096,632 - Psyr_0962 0.59 +0.9
1,096,847 + Psyr_0962 0.83 +1.5
1,097,048 + -1.7
1,097,048 + -0.7
1,097,048 + -1.3
1,097,048 + -0.2
1,097,048 + -1.4
1,097,048 + +1.0
1,097,048 + +3.2
1,097,048 + +1.8
1,097,048 + -0.7
1,097,049 - -0.4
1,097,049 - +0.4
1,097,049 - -0.5
1,097,049 - -0.2
1,097,049 - -0.4
1,097,049 - -1.6
1,097,049 - +1.0
1,097,049 - -1.6
1,097,049 - -2.0
1,097,049 - -0.3
1,097,049 - +1.4
1,097,049 - +1.8
1,097,049 - -1.8
1,097,049 - -0.4
1,097,049 - +0.3
1,097,049 - +0.1
1,097,066 + +1.0
1,097,067 - +0.8
1,097,067 - +0.5
1,097,185 - Psyr_0963 0.19 +0.8
1,097,185 - Psyr_0963 0.19 -0.0
1,097,201 + Psyr_0963 0.21 -1.2
1,097,283 - Psyr_0963 0.29 -0.3
1,097,283 - Psyr_0963 0.29 +0.1
1,097,283 - Psyr_0963 0.29 -1.1
1,097,283 - Psyr_0963 0.29 +0.6
1,097,283 - Psyr_0963 0.29 +1.9
1,097,348 + Psyr_0963 0.36 -0.2
1,097,348 + Psyr_0963 0.36 +0.0
1,097,348 + Psyr_0963 0.36 +1.2
1,097,348 + Psyr_0963 0.36 -2.6
1,097,348 + Psyr_0963 0.36 -1.6
1,097,348 + Psyr_0963 0.36 -0.1
1,097,348 + +2.2
1,097,348 + Psyr_0963 0.36 -0.1
1,097,348 + Psyr_0963 0.36 -0.2
1,097,348 + Psyr_0963 0.36 +1.2
1,097,349 - Psyr_0963 0.36 +0.8
1,097,349 - Psyr_0963 0.36 -0.4
1,097,349 - Psyr_0963 0.36 -0.1
1,097,349 - Psyr_0963 0.36 -0.8
1,097,349 - Psyr_0963 0.36 +0.8
1,097,349 - Psyr_0963 0.36 +1.6
1,097,349 - Psyr_0963 0.36 -1.1
1,097,349 - Psyr_0963 0.36 +0.8
1,097,349 - Psyr_0963 0.36 +0.3
1,097,349 - Psyr_0963 0.36 +0.7
1,097,384 + Psyr_0963 0.40 +3.5
1,097,453 + Psyr_0963 0.47 -1.4
1,097,558 + Psyr_0963 0.58 +0.4
1,097,558 + Psyr_0963 0.58 -0.7
1,097,558 + Psyr_0963 0.58 +0.0
1,097,558 + Psyr_0963 0.58 -2.0
1,097,558 + Psyr_0963 0.58 -0.7
1,097,558 + Psyr_0963 0.58 +1.2
1,097,559 - Psyr_0963 0.58 -1.8
1,097,559 - Psyr_0963 0.58 +1.8
1,097,559 - Psyr_0963 0.58 -0.5
1,097,559 - Psyr_0963 0.58 -1.8
1,097,559 - Psyr_0963 0.58 -0.4
1,097,559 - Psyr_0963 0.58 -0.1
1,097,559 - Psyr_0963 0.58 +1.0
1,097,559 - Psyr_0963 0.58 +0.3
1,097,559 - Psyr_0963 0.58 +0.0
1,097,654 + Psyr_0963 0.68 +1.5
1,097,655 - Psyr_0963 0.68 -1.7
1,097,689 + Psyr_0963 0.72 -0.1
1,097,689 + Psyr_0963 0.72 +0.7
1,097,689 + Psyr_0963 0.72 -0.5
1,097,689 + Psyr_0963 0.72 -1.0
1,097,690 - Psyr_0963 0.72 +0.3
1,097,690 - Psyr_0963 0.72 +1.1
1,097,690 - Psyr_0963 0.72 +0.6
1,097,843 + Psyr_0963 0.88 +0.5
1,097,843 + Psyr_0963 0.88 -2.3
1,097,844 - Psyr_0963 0.88 +0.9
1,097,862 + Psyr_0963 0.90 +1.5
1,097,863 - -1.6
1,097,863 - -0.0
1,097,975 + -0.2
1,097,994 + -1.0

Or see this region's nucleotide sequence