Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31885

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31880 and AZOBR_RS31885 are separated by 171 nucleotidesAZOBR_RS31885 and AZOBR_RS31890 are separated by 11 nucleotidesAZOBR_RS31890 and AZOBR_RS31895 overlap by 1 nucleotides AZOBR_RS31880: AZOBR_RS31880 - sugar ABC transporter ATP-binding protein, at 515,769 to 517,316 _RS31880 AZOBR_RS31885: AZOBR_RS31885 - ABC transporter permease, at 517,488 to 518,537 _RS31885 AZOBR_RS31890: AZOBR_RS31890 - ABC transporter permease, at 518,549 to 519,466 _RS31890 AZOBR_RS31895: AZOBR_RS31895 - cytosine deaminase, at 519,466 to 520,755 _RS31895 Position (kb) 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 516.855 kb on + strand, within AZOBR_RS31880at 517.089 kb on + strand, within AZOBR_RS31880at 517.089 kb on + strand, within AZOBR_RS31880at 517.089 kb on + strand, within AZOBR_RS31880at 517.089 kb on + strand, within AZOBR_RS31880at 517.090 kb on - strand, within AZOBR_RS31880at 517.090 kb on - strand, within AZOBR_RS31880at 517.090 kb on - strand, within AZOBR_RS31880at 517.197 kb on + strandat 517.298 kb on - strandat 517.298 kb on - strandat 517.393 kb on + strandat 517.393 kb on + strandat 517.393 kb on + strandat 517.393 kb on + strandat 517.394 kb on - strandat 517.394 kb on - strandat 517.617 kb on + strand, within AZOBR_RS31885at 517.764 kb on + strand, within AZOBR_RS31885at 517.764 kb on + strand, within AZOBR_RS31885at 517.764 kb on + strand, within AZOBR_RS31885at 517.764 kb on + strand, within AZOBR_RS31885at 517.764 kb on + strand, within AZOBR_RS31885at 517.764 kb on + strand, within AZOBR_RS31885at 517.765 kb on - strand, within AZOBR_RS31885at 517.765 kb on - strand, within AZOBR_RS31885at 517.765 kb on - strand, within AZOBR_RS31885at 517.765 kb on - strand, within AZOBR_RS31885at 518.148 kb on + strand, within AZOBR_RS31885at 518.292 kb on + strand, within AZOBR_RS31885at 518.451 kb on + strandat 518.451 kb on + strandat 518.451 kb on + strandat 518.451 kb on + strandat 518.451 kb on + strandat 518.452 kb on - strandat 518.452 kb on - strandat 518.452 kb on - strandat 518.452 kb on - strandat 518.622 kb on - strandat 518.622 kb on - strandat 518.729 kb on + strand, within AZOBR_RS31890at 518.729 kb on + strand, within AZOBR_RS31890at 518.729 kb on + strand, within AZOBR_RS31890at 518.880 kb on - strand, within AZOBR_RS31890at 518.984 kb on + strand, within AZOBR_RS31890at 518.984 kb on + strand, within AZOBR_RS31890at 518.985 kb on - strand, within AZOBR_RS31890at 518.985 kb on - strand, within AZOBR_RS31890at 518.985 kb on - strand, within AZOBR_RS31890at 518.985 kb on - strand, within AZOBR_RS31890at 518.985 kb on - strand, within AZOBR_RS31890at 518.985 kb on - strand, within AZOBR_RS31890at 518.985 kb on - strand, within AZOBR_RS31890at 519.017 kb on + strand, within AZOBR_RS31890at 519.017 kb on + strandat 519.017 kb on + strand, within AZOBR_RS31890at 519.027 kb on - strand, within AZOBR_RS31890at 519.374 kb on + strand, within AZOBR_RS31890at 519.446 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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516,855 + AZOBR_RS31880 0.70 +1.5
517,089 + AZOBR_RS31880 0.85 -0.9
517,089 + AZOBR_RS31880 0.85 +0.1
517,089 + AZOBR_RS31880 0.85 +0.3
517,089 + AZOBR_RS31880 0.85 +0.1
517,090 - AZOBR_RS31880 0.85 -0.7
517,090 - AZOBR_RS31880 0.85 -2.4
517,090 - AZOBR_RS31880 0.85 +1.9
517,197 + +2.9
517,298 - +0.9
517,298 - +0.3
517,393 + +0.3
517,393 + -0.1
517,393 + -0.4
517,393 + +0.3
517,394 - -0.7
517,394 - -0.7
517,617 + AZOBR_RS31885 0.12 +0.2
517,764 + AZOBR_RS31885 0.26 -1.8
517,764 + AZOBR_RS31885 0.26 +2.6
517,764 + AZOBR_RS31885 0.26 +0.5
517,764 + AZOBR_RS31885 0.26 -2.2
517,764 + AZOBR_RS31885 0.26 -1.2
517,764 + AZOBR_RS31885 0.26 +1.6
517,765 - AZOBR_RS31885 0.26 +1.0
517,765 - AZOBR_RS31885 0.26 +0.7
517,765 - AZOBR_RS31885 0.26 +0.9
517,765 - AZOBR_RS31885 0.26 +0.1
518,148 + AZOBR_RS31885 0.63 +2.6
518,292 + AZOBR_RS31885 0.77 +1.6
518,451 + -1.1
518,451 + -0.1
518,451 + -0.9
518,451 + +1.6
518,451 + +1.1
518,452 - +0.2
518,452 - -1.2
518,452 - -2.0
518,452 - -0.2
518,622 - +1.2
518,622 - -1.3
518,729 + AZOBR_RS31890 0.20 -0.0
518,729 + AZOBR_RS31890 0.20 -1.8
518,729 + AZOBR_RS31890 0.20 +1.1
518,880 - AZOBR_RS31890 0.36 +1.5
518,984 + AZOBR_RS31890 0.47 +0.4
518,984 + AZOBR_RS31890 0.47 +0.5
518,985 - AZOBR_RS31890 0.47 -0.6
518,985 - AZOBR_RS31890 0.47 +0.3
518,985 - AZOBR_RS31890 0.47 -0.4
518,985 - AZOBR_RS31890 0.47 -0.2
518,985 - AZOBR_RS31890 0.47 +0.0
518,985 - AZOBR_RS31890 0.47 -2.9
518,985 - AZOBR_RS31890 0.47 -2.5
519,017 + AZOBR_RS31890 0.51 -0.6
519,017 + +1.6
519,017 + AZOBR_RS31890 0.51 -0.3
519,027 - AZOBR_RS31890 0.52 -2.2
519,374 + AZOBR_RS31890 0.90 +0.6
519,446 + -0.7

Or see this region's nucleotide sequence