Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30505

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30505 and AZOBR_RS30510 are separated by 379 nucleotides AZOBR_RS30505: AZOBR_RS30505 - transcriptional regulator, at 190,870 to 191,565 _RS30505 AZOBR_RS30510: AZOBR_RS30510 - heme iron utilization protein, at 191,945 to 192,664 _RS30510 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 190.033 kb on + strandat 190.034 kb on - strandat 190.165 kb on + strandat 190.321 kb on + strandat 190.369 kb on + strandat 190.370 kb on - strandat 190.370 kb on - strandat 190.370 kb on - strandat 190.370 kb on - strandat 190.496 kb on - strandat 190.563 kb on + strandat 190.570 kb on + strandat 190.570 kb on + strandat 190.991 kb on + strand, within AZOBR_RS30505at 191.006 kb on + strand, within AZOBR_RS30505at 191.270 kb on + strand, within AZOBR_RS30505at 191.270 kb on + strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.472 kb on - strand, within AZOBR_RS30505at 191.472 kb on - strand, within AZOBR_RS30505at 191.551 kb on + strandat 191.552 kb on - strandat 191.716 kb on + strandat 191.783 kb on + strandat 191.799 kb on + strandat 192.287 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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190,033 + +0.6
190,034 - -0.9
190,165 + +0.6
190,321 + -2.8
190,369 + -2.0
190,370 - +1.4
190,370 - +1.4
190,370 - +1.0
190,370 - -0.2
190,496 - +0.5
190,563 + -2.3
190,570 + -3.1
190,570 + +0.3
190,991 + AZOBR_RS30505 0.17 +2.3
191,006 + AZOBR_RS30505 0.20 -1.6
191,270 + AZOBR_RS30505 0.57 +1.4
191,270 + AZOBR_RS30505 0.57 +0.9
191,271 - AZOBR_RS30505 0.58 -2.5
191,271 - AZOBR_RS30505 0.58 +0.5
191,271 - AZOBR_RS30505 0.58 -0.7
191,271 - AZOBR_RS30505 0.58 -1.8
191,472 - AZOBR_RS30505 0.86 -2.7
191,472 - AZOBR_RS30505 0.86 -1.3
191,551 + -0.6
191,552 - +0.4
191,716 + -0.2
191,783 + +0.7
191,799 + +1.1
192,287 + AZOBR_RS30510 0.47 -1.7
192,479 + AZOBR_RS30510 0.74 +0.0
192,479 + AZOBR_RS30510 0.74 +0.1
192,479 + AZOBR_RS30510 0.74 +1.2

Or see this region's nucleotide sequence