Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29370 and AZOBR_RS29375 are separated by 716 nucleotides AZOBR_RS29375 and AZOBR_RS29380 are separated by 26 nucleotides AZOBR_RS29380 and AZOBR_RS29385 are separated by 79 nucleotides
AZOBR_RS29370: AZOBR_RS29370 - integrase, at 709,955 to 710,959
_RS29370
AZOBR_RS29375: AZOBR_RS29375 - protein norD, at 711,676 to 713,598
_RS29375
AZOBR_RS29380: AZOBR_RS29380 - ATPase AAA, at 713,625 to 714,437
_RS29380
AZOBR_RS29385: AZOBR_RS29385 - nitric oxide reductase, at 714,517 to 715,869
_RS29385
Position (kb)
711
712
713
714 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 710.924 kb on + strand at 710.940 kb on + strand at 710.941 kb on - strand at 710.957 kb on + strand at 710.958 kb on - strand at 710.982 kb on + strand at 710.982 kb on + strand at 710.982 kb on + strand at 710.982 kb on + strand at 710.982 kb on + strand at 710.982 kb on + strand at 711.007 kb on - strand at 711.209 kb on + strand at 711.210 kb on - strand at 711.210 kb on - strand at 711.210 kb on - strand at 711.303 kb on + strand at 711.304 kb on - strand at 711.304 kb on - strand at 711.304 kb on - strand at 711.414 kb on - strand at 711.582 kb on - strand at 711.667 kb on + strand at 711.667 kb on + strand at 711.668 kb on - strand at 711.669 kb on + strand at 711.670 kb on - strand at 711.670 kb on - strand at 711.768 kb on - strand at 711.862 kb on + strand at 711.862 kb on + strand at 711.863 kb on - strand at 711.869 kb on + strand, within AZOBR_RS29375 at 711.882 kb on - strand, within AZOBR_RS29375 at 711.996 kb on - strand, within AZOBR_RS29375 at 711.996 kb on - strand, within AZOBR_RS29375 at 712.278 kb on - strand, within AZOBR_RS29375 at 712.511 kb on + strand, within AZOBR_RS29375 at 712.541 kb on + strand, within AZOBR_RS29375 at 712.940 kb on + strand, within AZOBR_RS29375 at 713.268 kb on - strand, within AZOBR_RS29375 at 713.983 kb on + strand, within AZOBR_RS29380 at 713.983 kb on + strand, within AZOBR_RS29380 at 714.121 kb on + strand, within AZOBR_RS29380 at 714.248 kb on - strand, within AZOBR_RS29380 at 714.248 kb on - strand, within AZOBR_RS29380 at 714.385 kb on + strand at 714.385 kb on + strand at 714.385 kb on + strand at 714.386 kb on - strand at 714.386 kb on - strand at 714.386 kb on - strand at 714.386 kb on - strand at 714.388 kb on + strand at 714.389 kb on - strand at 714.591 kb on - strand at 714.591 kb on - strand at 714.591 kb on - strand at 714.596 kb on + strand at 714.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 710,924 + -0.3 710,940 + +0.1 710,941 - -0.3 710,957 + -0.7 710,958 - -0.9 710,982 + +1.0 710,982 + +2.9 710,982 + -0.4 710,982 + +1.2 710,982 + -0.3 710,982 + -3.1 711,007 - -0.9 711,209 + +1.5 711,210 - -0.3 711,210 - -1.3 711,210 - +0.7 711,303 + +2.6 711,304 - -0.1 711,304 - -0.7 711,304 - +3.3 711,414 - +0.6 711,582 - -0.3 711,667 + +0.1 711,667 + +0.8 711,668 - -1.0 711,669 + +1.2 711,670 - +1.2 711,670 - -0.7 711,768 - +0.7 711,862 + -2.1 711,862 + +0.3 711,863 - -0.8 711,869 + AZOBR_RS29375 0.10 -0.5 711,882 - AZOBR_RS29375 0.11 -1.7 711,996 - AZOBR_RS29375 0.17 -2.6 711,996 - AZOBR_RS29375 0.17 +1.0 712,278 - AZOBR_RS29375 0.31 +0.0 712,511 + AZOBR_RS29375 0.43 -0.1 712,541 + AZOBR_RS29375 0.45 -0.4 712,940 + AZOBR_RS29375 0.66 -1.0 713,268 - AZOBR_RS29375 0.83 +0.6 713,983 + AZOBR_RS29380 0.44 -3.0 713,983 + AZOBR_RS29380 0.44 -0.9 714,121 + AZOBR_RS29380 0.61 +0.0 714,248 - AZOBR_RS29380 0.77 +0.6 714,248 - AZOBR_RS29380 0.77 +1.6 714,385 + +0.2 714,385 + +0.0 714,385 + -2.7 714,386 - +0.4 714,386 - +1.0 714,386 - -0.4 714,386 - +1.8 714,388 + -0.3 714,389 - +0.9 714,591 - -0.7 714,591 - -0.2 714,591 - +0.9 714,596 + -0.6 714,597 - -2.1
Or see this region's nucleotide sequence