Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28605 and AZOBR_RS28610 are separated by 109 nucleotides AZOBR_RS28610 and AZOBR_RS28615 are separated by 81 nucleotides AZOBR_RS28615 and AZOBR_RS28620 are separated by 278 nucleotides
AZOBR_RS28605: AZOBR_RS28605 - XRE family transcriptional regulator, at 592,542 to 593,342
_RS28605
AZOBR_RS28610: AZOBR_RS28610 - arylesterase, at 593,452 to 594,267
_RS28610
AZOBR_RS28615: AZOBR_RS28615 - hypothetical protein, at 594,349 to 594,717
_RS28615
AZOBR_RS28620: AZOBR_RS28620 - hypothetical protein, at 594,996 to 595,298
_RS28620
Position (kb) 593
594
595 Strain fitness (log2 ratio) -1
0
1 at 593.429 kb on - strand at 593.436 kb on + strand at 593.496 kb on + strand at 593.497 kb on - strand at 593.497 kb on - strand at 593.531 kb on + strand at 593.531 kb on + strand at 594.149 kb on + strand, within AZOBR_RS28610 at 594.149 kb on + strand, within AZOBR_RS28610 at 594.150 kb on - strand, within AZOBR_RS28610 at 594.351 kb on - strand at 594.608 kb on + strand, within AZOBR_RS28615 at 594.609 kb on - strand, within AZOBR_RS28615 at 594.609 kb on - strand, within AZOBR_RS28615 at 595.223 kb on + strand, within AZOBR_RS28620 at 595.224 kb on - strand, within AZOBR_RS28620 at 595.239 kb on + strand, within AZOBR_RS28620
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 593,429 - +0.9 593,436 + -0.0 593,496 + -0.8 593,497 - -0.3 593,497 - +0.4 593,531 + -1.4 593,531 + +0.6 594,149 + AZOBR_RS28610 0.85 -1.4 594,149 + AZOBR_RS28610 0.85 -0.5 594,150 - AZOBR_RS28610 0.86 -0.1 594,351 - -0.4 594,608 + AZOBR_RS28615 0.70 -0.6 594,609 - AZOBR_RS28615 0.70 +0.9 594,609 - AZOBR_RS28615 0.70 -0.6 595,223 + AZOBR_RS28620 0.75 -0.2 595,224 - AZOBR_RS28620 0.75 -1.0 595,239 + AZOBR_RS28620 0.80 +1.0
Or see this region's nucleotide sequence