Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23910 and AZOBR_RS23915 are separated by 439 nucleotides AZOBR_RS23915 and AZOBR_RS23920 are separated by 2 nucleotides AZOBR_RS23920 and AZOBR_RS23925 are separated by 4 nucleotides
AZOBR_RS23910: AZOBR_RS23910 - N-carbamoylsarcosine amidase, at 395,101 to 395,730
_RS23910
AZOBR_RS23915: AZOBR_RS23915 - ABC transporter substrate-binding protein, at 396,170 to 397,660
_RS23915
AZOBR_RS23920: AZOBR_RS23920 - peptide ABC transporter permease, at 397,663 to 398,601
_RS23920
AZOBR_RS23925: AZOBR_RS23925 - peptide ABC transporter permease, at 398,606 to 399,493
_RS23925
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 395.711 kb on + strand at 395.711 kb on + strand at 395.711 kb on + strand at 395.711 kb on + strand at 395.711 kb on + strand at 395.711 kb on + strand at 395.711 kb on + strand at 395.711 kb on + strand at 395.712 kb on - strand at 395.712 kb on - strand at 395.785 kb on + strand at 395.786 kb on - strand at 396.077 kb on - strand at 396.077 kb on - strand at 396.326 kb on + strand, within AZOBR_RS23915 at 396.327 kb on - strand, within AZOBR_RS23915 at 396.399 kb on - strand, within AZOBR_RS23915 at 396.513 kb on - strand, within AZOBR_RS23915 at 396.513 kb on - strand, within AZOBR_RS23915 at 396.607 kb on + strand, within AZOBR_RS23915 at 396.764 kb on + strand, within AZOBR_RS23915 at 396.765 kb on - strand, within AZOBR_RS23915 at 396.765 kb on - strand, within AZOBR_RS23915 at 396.765 kb on - strand, within AZOBR_RS23915 at 397.133 kb on + strand, within AZOBR_RS23915 at 397.436 kb on + strand, within AZOBR_RS23915 at 397.436 kb on + strand, within AZOBR_RS23915 at 397.505 kb on + strand, within AZOBR_RS23915 at 397.506 kb on - strand, within AZOBR_RS23915 at 397.506 kb on - strand, within AZOBR_RS23915 at 397.506 kb on - strand, within AZOBR_RS23915 at 397.506 kb on - strand, within AZOBR_RS23915 at 397.506 kb on - strand, within AZOBR_RS23915 at 397.768 kb on + strand, within AZOBR_RS23920 at 397.768 kb on + strand, within AZOBR_RS23920 at 397.768 kb on + strand, within AZOBR_RS23920 at 397.769 kb on - strand, within AZOBR_RS23920 at 397.769 kb on - strand, within AZOBR_RS23920 at 397.843 kb on + strand, within AZOBR_RS23920 at 397.843 kb on + strand, within AZOBR_RS23920 at 397.843 kb on + strand, within AZOBR_RS23920 at 397.861 kb on + strand, within AZOBR_RS23920 at 397.861 kb on + strand, within AZOBR_RS23920 at 397.862 kb on - strand, within AZOBR_RS23920 at 397.862 kb on - strand, within AZOBR_RS23920 at 397.862 kb on - strand, within AZOBR_RS23920 at 397.862 kb on - strand, within AZOBR_RS23920 at 397.862 kb on - strand, within AZOBR_RS23920 at 398.239 kb on + strand, within AZOBR_RS23920 at 398.239 kb on + strand, within AZOBR_RS23920 at 398.239 kb on + strand, within AZOBR_RS23920 at 398.240 kb on - strand, within AZOBR_RS23920 at 398.240 kb on - strand, within AZOBR_RS23920 at 398.240 kb on - strand, within AZOBR_RS23920 at 398.491 kb on + strand, within AZOBR_RS23920 at 398.491 kb on + strand, within AZOBR_RS23920
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 395,711 + -0.7 395,711 + -1.2 395,711 + +0.4 395,711 + +0.5 395,711 + -1.5 395,711 + -0.3 395,711 + +0.1 395,711 + -0.5 395,712 - -0.2 395,712 - +0.2 395,785 + +0.1 395,786 - -0.6 396,077 - +0.0 396,077 - -1.5 396,326 + AZOBR_RS23915 0.10 -0.4 396,327 - AZOBR_RS23915 0.11 -1.7 396,399 - AZOBR_RS23915 0.15 -1.1 396,513 - AZOBR_RS23915 0.23 -0.8 396,513 - AZOBR_RS23915 0.23 -1.7 396,607 + AZOBR_RS23915 0.29 -0.9 396,764 + AZOBR_RS23915 0.40 -0.1 396,765 - AZOBR_RS23915 0.40 -1.0 396,765 - AZOBR_RS23915 0.40 -1.5 396,765 - AZOBR_RS23915 0.40 -0.4 397,133 + AZOBR_RS23915 0.65 +0.2 397,436 + AZOBR_RS23915 0.85 +0.7 397,436 + AZOBR_RS23915 0.85 +0.8 397,505 + AZOBR_RS23915 0.90 +0.8 397,506 - AZOBR_RS23915 0.90 +1.2 397,506 - AZOBR_RS23915 0.90 -0.3 397,506 - AZOBR_RS23915 0.90 -1.0 397,506 - AZOBR_RS23915 0.90 -2.4 397,506 - AZOBR_RS23915 0.90 -1.5 397,768 + AZOBR_RS23920 0.11 +2.4 397,768 + AZOBR_RS23920 0.11 +0.5 397,768 + AZOBR_RS23920 0.11 +0.1 397,769 - AZOBR_RS23920 0.11 -1.7 397,769 - AZOBR_RS23920 0.11 +0.7 397,843 + AZOBR_RS23920 0.19 -1.5 397,843 + AZOBR_RS23920 0.19 -1.0 397,843 + AZOBR_RS23920 0.19 -0.1 397,861 + AZOBR_RS23920 0.21 +0.5 397,861 + AZOBR_RS23920 0.21 +0.8 397,862 - AZOBR_RS23920 0.21 -0.5 397,862 - AZOBR_RS23920 0.21 -0.0 397,862 - AZOBR_RS23920 0.21 -0.7 397,862 - AZOBR_RS23920 0.21 +1.2 397,862 - AZOBR_RS23920 0.21 +0.1 398,239 + AZOBR_RS23920 0.61 -2.4 398,239 + AZOBR_RS23920 0.61 +0.9 398,239 + AZOBR_RS23920 0.61 +0.1 398,240 - AZOBR_RS23920 0.61 +0.1 398,240 - AZOBR_RS23920 0.61 +0.6 398,240 - AZOBR_RS23920 0.61 -1.3 398,491 + AZOBR_RS23920 0.88 +3.7 398,491 + AZOBR_RS23920 0.88 -0.5
Or see this region's nucleotide sequence