Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22325 and AZOBR_RS22330 are separated by 73 nucleotides
AZOBR_RS22325: AZOBR_RS22325 - branched-chain amino acid ABC transporter ATP-binding protein, at 15,123 to 15,983
_RS22325
AZOBR_RS22330: AZOBR_RS22330 - branched-chain amino acid ABC transporter substrate-binding protein, at 16,057 to 17,340
_RS22330
Position (kb) 15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.295 kb on + strand at 14.295 kb on + strand at 14.296 kb on - strand at 14.296 kb on - strand at 14.304 kb on + strand at 14.328 kb on + strand at 14.328 kb on + strand at 14.329 kb on - strand at 14.329 kb on - strand at 14.332 kb on - strand at 14.332 kb on - strand at 14.965 kb on - strand at 14.965 kb on - strand at 15.057 kb on + strand at 15.058 kb on - strand at 15.058 kb on - strand at 15.277 kb on + strand, within AZOBR_RS22325 at 15.533 kb on - strand, within AZOBR_RS22325 at 15.533 kb on - strand, within AZOBR_RS22325 at 15.538 kb on + strand, within AZOBR_RS22325 at 15.538 kb on + strand, within AZOBR_RS22325 at 15.539 kb on - strand, within AZOBR_RS22325 at 15.539 kb on - strand, within AZOBR_RS22325 at 15.539 kb on - strand, within AZOBR_RS22325 at 15.674 kb on + strand, within AZOBR_RS22325 at 15.874 kb on + strand, within AZOBR_RS22325 at 15.875 kb on - strand, within AZOBR_RS22325 at 16.280 kb on + strand, within AZOBR_RS22330 at 16.280 kb on + strand, within AZOBR_RS22330 at 16.281 kb on - strand, within AZOBR_RS22330 at 16.281 kb on - strand, within AZOBR_RS22330 at 16.352 kb on + strand, within AZOBR_RS22330 at 16.353 kb on - strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.395 kb on - strand, within AZOBR_RS22330 at 16.635 kb on - strand, within AZOBR_RS22330 at 16.640 kb on + strand, within AZOBR_RS22330 at 16.640 kb on + strand, within AZOBR_RS22330 at 16.640 kb on + strand, within AZOBR_RS22330 at 16.640 kb on + strand, within AZOBR_RS22330 at 16.641 kb on - strand at 16.641 kb on - strand, within AZOBR_RS22330 at 16.641 kb on - strand, within AZOBR_RS22330 at 16.641 kb on - strand, within AZOBR_RS22330 at 16.641 kb on - strand, within AZOBR_RS22330 at 16.683 kb on - strand, within AZOBR_RS22330 at 16.805 kb on + strand, within AZOBR_RS22330 at 16.805 kb on + strand, within AZOBR_RS22330 at 16.806 kb on - strand, within AZOBR_RS22330 at 16.883 kb on + strand, within AZOBR_RS22330 at 16.907 kb on + strand, within AZOBR_RS22330 at 16.908 kb on - strand, within AZOBR_RS22330 at 16.979 kb on + strand, within AZOBR_RS22330 at 16.983 kb on - strand, within AZOBR_RS22330
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 14,295 + -0.8 14,295 + +0.1 14,296 - -0.8 14,296 - +1.4 14,304 + -3.4 14,328 + -0.9 14,328 + -0.9 14,329 - +0.8 14,329 - -1.1 14,332 - -0.2 14,332 - +1.3 14,965 - +0.6 14,965 - -2.3 15,057 + -1.6 15,058 - -0.6 15,058 - -2.4 15,277 + AZOBR_RS22325 0.18 -0.8 15,533 - AZOBR_RS22325 0.48 -1.0 15,533 - AZOBR_RS22325 0.48 -1.3 15,538 + AZOBR_RS22325 0.48 -0.8 15,538 + AZOBR_RS22325 0.48 +1.0 15,539 - AZOBR_RS22325 0.48 -0.8 15,539 - AZOBR_RS22325 0.48 -0.5 15,539 - AZOBR_RS22325 0.48 -2.3 15,674 + AZOBR_RS22325 0.64 -0.3 15,874 + AZOBR_RS22325 0.87 -3.7 15,875 - AZOBR_RS22325 0.87 +0.4 16,280 + AZOBR_RS22330 0.17 +0.0 16,280 + AZOBR_RS22330 0.17 +0.1 16,281 - AZOBR_RS22330 0.17 -0.5 16,281 - AZOBR_RS22330 0.17 +2.2 16,352 + AZOBR_RS22330 0.23 -2.0 16,353 - AZOBR_RS22330 0.23 +0.4 16,379 + AZOBR_RS22330 0.25 -0.4 16,379 + AZOBR_RS22330 0.25 +0.6 16,379 + AZOBR_RS22330 0.25 +0.2 16,379 + AZOBR_RS22330 0.25 +0.9 16,379 + AZOBR_RS22330 0.25 +0.4 16,380 - AZOBR_RS22330 0.25 +0.0 16,380 - AZOBR_RS22330 0.25 +0.6 16,380 - AZOBR_RS22330 0.25 -0.1 16,380 - AZOBR_RS22330 0.25 +0.1 16,380 - AZOBR_RS22330 0.25 -1.2 16,380 - AZOBR_RS22330 0.25 +1.4 16,395 - AZOBR_RS22330 0.26 +0.3 16,635 - AZOBR_RS22330 0.45 +0.4 16,640 + AZOBR_RS22330 0.45 -1.6 16,640 + AZOBR_RS22330 0.45 +0.0 16,640 + AZOBR_RS22330 0.45 -1.2 16,640 + AZOBR_RS22330 0.45 -0.6 16,641 - -0.8 16,641 - AZOBR_RS22330 0.45 -1.7 16,641 - AZOBR_RS22330 0.45 -1.0 16,641 - AZOBR_RS22330 0.45 -0.7 16,641 - AZOBR_RS22330 0.45 -0.8 16,683 - AZOBR_RS22330 0.49 -0.5 16,805 + AZOBR_RS22330 0.58 -0.7 16,805 + AZOBR_RS22330 0.58 -2.7 16,806 - AZOBR_RS22330 0.58 +0.8 16,883 + AZOBR_RS22330 0.64 +1.2 16,907 + AZOBR_RS22330 0.66 +2.6 16,908 - AZOBR_RS22330 0.66 -1.3 16,979 + AZOBR_RS22330 0.72 +1.2 16,983 - AZOBR_RS22330 0.72 -0.2
Or see this region's nucleotide sequence