Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22300

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22295 and AZOBR_RS22300 are separated by 28 nucleotides AZOBR_RS22295: AZOBR_RS22295 - methylcrotonoyl-CoA carboxylase, at 6,675 to 8,282 _RS22295 AZOBR_RS22300: AZOBR_RS22300 - acyl-CoA dehydrogenase, at 8,311 to 9,444 _RS22300 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1 2at 7.433 kb on - strand, within AZOBR_RS22295at 8.313 kb on - strandat 8.313 kb on - strandat 8.313 kb on - strandat 8.313 kb on - strandat 8.313 kb on - strandat 8.367 kb on - strandat 8.394 kb on - strandat 8.394 kb on - strandat 8.661 kb on - strand, within AZOBR_RS22300at 8.797 kb on - strandat 9.511 kb on - strandat 9.543 kb on - strandat 9.543 kb on - strandat 10.210 kb on - strandat 10.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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7,433 - AZOBR_RS22295 0.47 -1.4
8,313 - +0.2
8,313 - +2.6
8,313 - +1.8
8,313 - +0.3
8,313 - +1.6
8,367 - +0.6
8,394 - +0.6
8,394 - -0.5
8,661 - AZOBR_RS22300 0.31 -0.3
8,797 - +0.8
9,511 - +2.0
9,543 - +0.3
9,543 - +0.8
10,210 - -0.5
10,379 - +2.4

Or see this region's nucleotide sequence