Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15880 and AZOBR_RS15885 are separated by 85 nucleotides AZOBR_RS15885 and AZOBR_RS15890 are separated by 53 nucleotides
AZOBR_RS15880: AZOBR_RS15880 - hypothetical protein, at 315,353 to 316,531
_RS15880
AZOBR_RS15885: AZOBR_RS15885 - DNA processing protein DprA, at 316,617 to 317,738
_RS15885
AZOBR_RS15890: AZOBR_RS15890 - DNA topoisomerase I, at 317,792 to 320,671
_RS15890
Position (kb) 316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 315.752 kb on + strand, within AZOBR_RS15880 at 315.752 kb on + strand, within AZOBR_RS15880 at 315.752 kb on + strand, within AZOBR_RS15880 at 315.752 kb on + strand, within AZOBR_RS15880 at 315.753 kb on - strand, within AZOBR_RS15880 at 315.939 kb on + strand, within AZOBR_RS15880 at 315.939 kb on + strand, within AZOBR_RS15880 at 315.940 kb on - strand, within AZOBR_RS15880 at 315.940 kb on - strand, within AZOBR_RS15880 at 315.961 kb on - strand, within AZOBR_RS15880 at 315.961 kb on - strand, within AZOBR_RS15880 at 316.529 kb on + strand at 316.529 kb on + strand at 316.530 kb on - strand at 316.530 kb on - strand at 316.530 kb on - strand at 316.530 kb on - strand at 316.604 kb on + strand at 316.819 kb on + strand, within AZOBR_RS15885 at 316.819 kb on + strand, within AZOBR_RS15885 at 316.819 kb on + strand, within AZOBR_RS15885 at 316.819 kb on + strand, within AZOBR_RS15885 at 316.819 kb on + strand, within AZOBR_RS15885 at 316.819 kb on + strand, within AZOBR_RS15885 at 316.820 kb on - strand, within AZOBR_RS15885 at 316.820 kb on - strand, within AZOBR_RS15885 at 317.181 kb on + strand, within AZOBR_RS15885 at 317.191 kb on + strand, within AZOBR_RS15885 at 317.192 kb on - strand, within AZOBR_RS15885 at 317.192 kb on - strand, within AZOBR_RS15885 at 317.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 315,752 + AZOBR_RS15880 0.34 -1.6 315,752 + AZOBR_RS15880 0.34 +0.2 315,752 + AZOBR_RS15880 0.34 -2.2 315,752 + AZOBR_RS15880 0.34 +2.4 315,753 - AZOBR_RS15880 0.34 +0.3 315,939 + AZOBR_RS15880 0.50 +0.6 315,939 + AZOBR_RS15880 0.50 -0.2 315,940 - AZOBR_RS15880 0.50 +0.6 315,940 - AZOBR_RS15880 0.50 -2.9 315,961 - AZOBR_RS15880 0.52 +0.7 315,961 - AZOBR_RS15880 0.52 -0.0 316,529 + -0.2 316,529 + -0.6 316,530 - -0.5 316,530 - -3.1 316,530 - -2.5 316,530 - -1.5 316,604 + +0.1 316,819 + AZOBR_RS15885 0.18 -0.5 316,819 + AZOBR_RS15885 0.18 +2.2 316,819 + AZOBR_RS15885 0.18 +1.4 316,819 + AZOBR_RS15885 0.18 -0.6 316,819 + AZOBR_RS15885 0.18 +0.8 316,819 + AZOBR_RS15885 0.18 +1.0 316,820 - AZOBR_RS15885 0.18 +0.3 316,820 - AZOBR_RS15885 0.18 +0.8 317,181 + AZOBR_RS15885 0.50 +0.3 317,191 + AZOBR_RS15885 0.51 +0.4 317,192 - AZOBR_RS15885 0.51 +2.4 317,192 - AZOBR_RS15885 0.51 -0.6 317,760 + +1.4
Or see this region's nucleotide sequence