Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15605 and AZOBR_RS15610 overlap by 4 nucleotides AZOBR_RS15610 and AZOBR_RS15615 are separated by 108 nucleotides AZOBR_RS15615 and AZOBR_RS15620 are separated by 129 nucleotides
AZOBR_RS15605: AZOBR_RS15605 - ABC transporter permease, at 257,900 to 258,898
_RS15605
AZOBR_RS15610: AZOBR_RS15610 - ABC transporter permease, at 258,895 to 259,767
_RS15610
AZOBR_RS15615: AZOBR_RS15615 - ABC transporter substrate-binding protein, at 259,876 to 261,084
_RS15615
AZOBR_RS15620: AZOBR_RS15620 - GntR family transcriptional regulator, at 261,214 to 262,008
_RS15620
Position (kb) 259
260
261
262 Strain fitness (log2 ratio) -2
-1
0
1 at 259.124 kb on + strand, within AZOBR_RS15610 at 259.124 kb on + strand, within AZOBR_RS15610 at 259.125 kb on - strand, within AZOBR_RS15610 at 259.125 kb on - strand, within AZOBR_RS15610 at 259.194 kb on - strand, within AZOBR_RS15610 at 259.194 kb on - strand, within AZOBR_RS15610 at 259.194 kb on - strand, within AZOBR_RS15610 at 259.385 kb on + strand, within AZOBR_RS15610 at 259.575 kb on - strand, within AZOBR_RS15610 at 259.673 kb on + strand, within AZOBR_RS15610 at 259.706 kb on + strand at 259.707 kb on - strand at 259.707 kb on - strand at 259.763 kb on + strand at 259.763 kb on + strand at 259.763 kb on + strand at 259.763 kb on + strand at 259.764 kb on - strand at 259.764 kb on - strand at 259.764 kb on - strand at 259.764 kb on - strand at 259.764 kb on - strand at 259.839 kb on - strand at 259.889 kb on + strand at 259.889 kb on + strand at 260.120 kb on + strand, within AZOBR_RS15615 at 260.139 kb on - strand, within AZOBR_RS15615 at 260.139 kb on - strand, within AZOBR_RS15615 at 260.297 kb on + strand, within AZOBR_RS15615 at 260.364 kb on - strand, within AZOBR_RS15615 at 260.364 kb on - strand, within AZOBR_RS15615 at 260.424 kb on + strand, within AZOBR_RS15615 at 260.425 kb on - strand, within AZOBR_RS15615 at 260.697 kb on - strand, within AZOBR_RS15615 at 260.697 kb on - strand, within AZOBR_RS15615 at 261.542 kb on + strand, within AZOBR_RS15620 at 261.581 kb on + strand, within AZOBR_RS15620 at 261.582 kb on - strand, within AZOBR_RS15620 at 262.042 kb on + strand at 262.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 259,124 + AZOBR_RS15610 0.26 -1.2 259,124 + AZOBR_RS15610 0.26 +1.4 259,125 - AZOBR_RS15610 0.26 +1.2 259,125 - AZOBR_RS15610 0.26 -0.6 259,194 - AZOBR_RS15610 0.34 -2.5 259,194 - AZOBR_RS15610 0.34 +1.6 259,194 - AZOBR_RS15610 0.34 -0.5 259,385 + AZOBR_RS15610 0.56 +0.1 259,575 - AZOBR_RS15610 0.78 +1.6 259,673 + AZOBR_RS15610 0.89 -1.7 259,706 + +0.7 259,707 - +0.7 259,707 - -0.4 259,763 + +1.4 259,763 + +1.2 259,763 + -0.4 259,763 + +0.1 259,764 - +1.6 259,764 - -1.4 259,764 - -0.4 259,764 - +1.0 259,764 - -1.1 259,839 - -2.4 259,889 + +0.5 259,889 + -0.1 260,120 + AZOBR_RS15615 0.20 -0.0 260,139 - AZOBR_RS15615 0.22 +0.9 260,139 - AZOBR_RS15615 0.22 +0.8 260,297 + AZOBR_RS15615 0.35 -1.1 260,364 - AZOBR_RS15615 0.40 -0.6 260,364 - AZOBR_RS15615 0.40 -1.6 260,424 + AZOBR_RS15615 0.45 -0.1 260,425 - AZOBR_RS15615 0.45 -1.6 260,697 - AZOBR_RS15615 0.68 -0.5 260,697 - AZOBR_RS15615 0.68 +0.1 261,542 + AZOBR_RS15620 0.41 -1.3 261,581 + AZOBR_RS15620 0.46 -1.3 261,582 - AZOBR_RS15620 0.46 -0.4 262,042 + -2.0 262,042 + -2.0
Or see this region's nucleotide sequence