Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14065

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14060 and AZOBR_RS14065 are separated by 250 nucleotidesAZOBR_RS14065 and AZOBR_RS14070 are separated by 1 nucleotides AZOBR_RS14060: AZOBR_RS14060 - malate dehydrogenase, at 2,954,325 to 2,955,293 _RS14060 AZOBR_RS14065: AZOBR_RS14065 - malate--CoA ligase subunit beta, at 2,955,544 to 2,956,740 _RS14065 AZOBR_RS14070: AZOBR_RS14070 - succinyl-CoA synthetase subsunit alpha, at 2,956,742 to 2,957,617 _RS14070 Position (kb) 2955 2956 2957Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2955.586 kb on + strandat 2955.586 kb on + strandat 2955.587 kb on - strandat 2955.859 kb on + strand, within AZOBR_RS14065at 2955.860 kb on - strand, within AZOBR_RS14065at 2955.896 kb on - strand, within AZOBR_RS14065at 2955.896 kb on - strand, within AZOBR_RS14065at 2955.896 kb on - strand, within AZOBR_RS14065at 2956.042 kb on + strand, within AZOBR_RS14065at 2956.324 kb on + strand, within AZOBR_RS14065at 2956.324 kb on + strand, within AZOBR_RS14065at 2956.738 kb on + strandat 2956.738 kb on + strandat 2956.738 kb on + strandat 2956.739 kb on - strandat 2956.739 kb on - strandat 2956.760 kb on - strandat 2956.955 kb on + strand, within AZOBR_RS14070at 2956.955 kb on + strand, within AZOBR_RS14070at 2956.955 kb on + strand, within AZOBR_RS14070at 2956.956 kb on - strand, within AZOBR_RS14070at 2956.956 kb on - strand, within AZOBR_RS14070at 2956.956 kb on - strand, within AZOBR_RS14070at 2957.216 kb on + strand, within AZOBR_RS14070at 2957.618 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,955,586 + -1.1
2,955,586 + +0.2
2,955,587 - +0.3
2,955,859 + AZOBR_RS14065 0.26 +1.1
2,955,860 - AZOBR_RS14065 0.26 +2.5
2,955,896 - AZOBR_RS14065 0.29 +0.5
2,955,896 - AZOBR_RS14065 0.29 -0.0
2,955,896 - AZOBR_RS14065 0.29 +0.1
2,956,042 + AZOBR_RS14065 0.42 +0.5
2,956,324 + AZOBR_RS14065 0.65 -1.6
2,956,324 + AZOBR_RS14065 0.65 +1.1
2,956,738 + +0.2
2,956,738 + +0.8
2,956,738 + -1.2
2,956,739 - -1.3
2,956,739 - +1.5
2,956,760 - +1.3
2,956,955 + AZOBR_RS14070 0.24 +0.9
2,956,955 + AZOBR_RS14070 0.24 +0.5
2,956,955 + AZOBR_RS14070 0.24 +0.1
2,956,956 - AZOBR_RS14070 0.24 +0.9
2,956,956 - AZOBR_RS14070 0.24 +2.8
2,956,956 - AZOBR_RS14070 0.24 +0.6
2,957,216 + AZOBR_RS14070 0.54 +2.5
2,957,618 + -1.8

Or see this region's nucleotide sequence