Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS11900 and AZOBR_RS11905 are separated by 141 nucleotides AZOBR_RS11905 and AZOBR_RS11910 are separated by 2 nucleotides AZOBR_RS11910 and AZOBR_RS11915 are separated by 94 nucleotides
AZOBR_RS11900: AZOBR_RS11900 - hypothetical protein, at 2,503,268 to 2,504,104
_RS11900
AZOBR_RS11905: AZOBR_RS11905 - 50S ribosomal protein L11 methyltransferase, at 2,504,246 to 2,504,905
_RS11905
AZOBR_RS11910: AZOBR_RS11910 - DNA alkylation repair protein, at 2,504,908 to 2,505,684
_RS11910
AZOBR_RS11915: AZOBR_RS11915 - 3-polyprenyl-4-hydroxybenzoate decarboxylase, at 2,505,779 to 2,507,305
_RS11915
Position (kb)
2504
2505 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2503.671 kb on + strand, within AZOBR_RS11900 at 2503.681 kb on - strand, within AZOBR_RS11900 at 2503.927 kb on - strand, within AZOBR_RS11900 at 2503.927 kb on - strand, within AZOBR_RS11900 at 2503.927 kb on - strand, within AZOBR_RS11900 at 2504.036 kb on + strand at 2504.105 kb on - strand at 2504.168 kb on - strand at 2504.182 kb on - strand at 2504.182 kb on - strand at 2504.185 kb on + strand at 2504.185 kb on + strand at 2504.205 kb on + strand at 2504.206 kb on - strand at 2504.246 kb on - strand at 2504.293 kb on - strand at 2504.392 kb on - strand, within AZOBR_RS11905 at 2504.789 kb on + strand, within AZOBR_RS11905 at 2504.789 kb on + strand, within AZOBR_RS11905 at 2504.790 kb on - strand, within AZOBR_RS11905 at 2504.790 kb on - strand, within AZOBR_RS11905 at 2504.825 kb on + strand, within AZOBR_RS11905 at 2504.826 kb on - strand, within AZOBR_RS11905 at 2504.826 kb on - strand, within AZOBR_RS11905 at 2505.211 kb on + strand, within AZOBR_RS11910 at 2505.211 kb on + strand, within AZOBR_RS11910 at 2505.211 kb on + strand, within AZOBR_RS11910 at 2505.212 kb on - strand, within AZOBR_RS11910 at 2505.212 kb on - strand, within AZOBR_RS11910 at 2505.729 kb on - strand at 2505.729 kb on - strand at 2505.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 2,503,671 + AZOBR_RS11900 0.48 -0.7 2,503,681 - AZOBR_RS11900 0.49 +0.3 2,503,927 - AZOBR_RS11900 0.79 -0.6 2,503,927 - AZOBR_RS11900 0.79 -0.8 2,503,927 - AZOBR_RS11900 0.79 -0.9 2,504,036 + +0.4 2,504,105 - -0.8 2,504,168 - +0.4 2,504,182 - +1.4 2,504,182 - -0.0 2,504,185 + -2.5 2,504,185 + -0.6 2,504,205 + -1.9 2,504,206 - -1.1 2,504,246 - -2.3 2,504,293 - -0.4 2,504,392 - AZOBR_RS11905 0.22 +0.3 2,504,789 + AZOBR_RS11905 0.82 +1.8 2,504,789 + AZOBR_RS11905 0.82 +0.9 2,504,790 - AZOBR_RS11905 0.82 -1.3 2,504,790 - AZOBR_RS11905 0.82 +1.6 2,504,825 + AZOBR_RS11905 0.88 -1.8 2,504,826 - AZOBR_RS11905 0.88 +0.6 2,504,826 - AZOBR_RS11905 0.88 -1.2 2,505,211 + AZOBR_RS11910 0.39 -0.4 2,505,211 + AZOBR_RS11910 0.39 -0.2 2,505,211 + AZOBR_RS11910 0.39 +0.4 2,505,212 - AZOBR_RS11910 0.39 -2.0 2,505,212 - AZOBR_RS11910 0.39 -0.1 2,505,729 - -1.4 2,505,729 - +1.4 2,505,785 + -1.5
Or see this region's nucleotide sequence