Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11165

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11160 and AZOBR_RS11165 are separated by 84 nucleotidesAZOBR_RS11165 and AZOBR_RS11170 are separated by 79 nucleotides AZOBR_RS11160: AZOBR_RS11160 - potassium transporter Kup, at 2,346,101 to 2,347,999 _RS11160 AZOBR_RS11165: AZOBR_RS11165 - hypothetical protein, at 2,348,084 to 2,348,269 _RS11165 AZOBR_RS11170: AZOBR_RS11170 - membrane protein, at 2,348,349 to 2,351,819 _RS11170 Position (kb) 2348 2349Strain fitness (log2 ratio) -1 0 1 2 3at 2347.139 kb on + strand, within AZOBR_RS11160at 2347.139 kb on + strand, within AZOBR_RS11160at 2347.139 kb on + strand, within AZOBR_RS11160at 2347.140 kb on - strand, within AZOBR_RS11160at 2347.140 kb on - strand, within AZOBR_RS11160at 2347.730 kb on + strand, within AZOBR_RS11160at 2347.821 kb on + strandat 2347.822 kb on - strandat 2347.822 kb on - strandat 2348.350 kb on + strandat 2348.351 kb on - strandat 2348.380 kb on + strandat 2348.381 kb on - strandat 2348.552 kb on + strandat 2348.552 kb on + strandat 2348.553 kb on - strandat 2348.553 kb on - strandat 2349.079 kb on + strand, within AZOBR_RS11170at 2349.127 kb on + strand, within AZOBR_RS11170at 2349.127 kb on + strand, within AZOBR_RS11170at 2349.128 kb on - strand, within AZOBR_RS11170at 2349.128 kb on - strand, within AZOBR_RS11170at 2349.128 kb on - strand, within AZOBR_RS11170

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,347,139 + AZOBR_RS11160 0.55 +0.0
2,347,139 + AZOBR_RS11160 0.55 -0.0
2,347,139 + AZOBR_RS11160 0.55 +2.3
2,347,140 - AZOBR_RS11160 0.55 +0.1
2,347,140 - AZOBR_RS11160 0.55 +0.6
2,347,730 + AZOBR_RS11160 0.86 +0.4
2,347,821 + +0.5
2,347,822 - +0.2
2,347,822 - -0.3
2,348,350 + -1.2
2,348,351 - +0.6
2,348,380 + +0.3
2,348,381 - -0.0
2,348,552 + +1.7
2,348,552 + +2.3
2,348,553 - +2.5
2,348,553 - +1.3
2,349,079 + AZOBR_RS11170 0.21 -0.5
2,349,127 + AZOBR_RS11170 0.22 +3.0
2,349,127 + AZOBR_RS11170 0.22 -0.2
2,349,128 - AZOBR_RS11170 0.22 +2.3
2,349,128 - AZOBR_RS11170 0.22 +2.2
2,349,128 - AZOBR_RS11170 0.22 +1.6

Or see this region's nucleotide sequence