Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS07385 and AZOBR_RS07390 overlap by 4 nucleotides AZOBR_RS07390 and AZOBR_RS07395 are separated by 6 nucleotides AZOBR_RS07395 and AZOBR_RS07400 are separated by 121 nucleotides
AZOBR_RS07385: AZOBR_RS07385 - lipid-A-disaccharide synthase, at 1,556,463 to 1,557,683
_RS07385
AZOBR_RS07390: AZOBR_RS07390 - glyoxalase I, at 1,557,680 to 1,558,075
_RS07390
AZOBR_RS07395: AZOBR_RS07395 - acetyltransferase, at 1,558,082 to 1,558,609
_RS07395
AZOBR_RS07400: AZOBR_RS07400 - hypothetical protein, at 1,558,731 to 1,559,600
_RS07400
Position (kb) 1557
1558
1559 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1557.626 kb on + strand at 1557.719 kb on + strand at 1557.746 kb on + strand, within AZOBR_RS07390 at 1557.746 kb on + strand, within AZOBR_RS07390 at 1557.747 kb on - strand, within AZOBR_RS07390 at 1557.747 kb on - strand, within AZOBR_RS07390 at 1557.887 kb on + strand, within AZOBR_RS07390 at 1557.938 kb on + strand, within AZOBR_RS07390 at 1557.938 kb on + strand, within AZOBR_RS07390 at 1557.938 kb on + strand, within AZOBR_RS07390 at 1557.938 kb on + strand, within AZOBR_RS07390 at 1557.938 kb on + strand, within AZOBR_RS07390 at 1557.938 kb on + strand, within AZOBR_RS07390 at 1557.938 kb on + strand, within AZOBR_RS07390 at 1557.938 kb on + strand, within AZOBR_RS07390 at 1557.939 kb on - strand, within AZOBR_RS07390 at 1557.939 kb on - strand, within AZOBR_RS07390 at 1557.939 kb on - strand, within AZOBR_RS07390 at 1557.939 kb on - strand, within AZOBR_RS07390 at 1558.047 kb on - strand at 1558.183 kb on - strand, within AZOBR_RS07395 at 1558.183 kb on - strand, within AZOBR_RS07395 at 1558.183 kb on - strand, within AZOBR_RS07395
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,557,626 + -1.4 1,557,719 + -1.7 1,557,746 + AZOBR_RS07390 0.17 +0.7 1,557,746 + AZOBR_RS07390 0.17 -1.1 1,557,747 - AZOBR_RS07390 0.17 -2.9 1,557,747 - AZOBR_RS07390 0.17 +0.1 1,557,887 + AZOBR_RS07390 0.52 -1.5 1,557,938 + AZOBR_RS07390 0.65 +0.3 1,557,938 + AZOBR_RS07390 0.65 -2.5 1,557,938 + AZOBR_RS07390 0.65 -1.5 1,557,938 + AZOBR_RS07390 0.65 +0.3 1,557,938 + AZOBR_RS07390 0.65 +0.0 1,557,938 + AZOBR_RS07390 0.65 -2.2 1,557,938 + AZOBR_RS07390 0.65 -1.6 1,557,938 + AZOBR_RS07390 0.65 -0.2 1,557,939 - AZOBR_RS07390 0.65 +1.1 1,557,939 - AZOBR_RS07390 0.65 -0.4 1,557,939 - AZOBR_RS07390 0.65 -1.2 1,557,939 - AZOBR_RS07390 0.65 +0.4 1,558,047 - -0.6 1,558,183 - AZOBR_RS07395 0.19 -1.7 1,558,183 - AZOBR_RS07395 0.19 -2.5 1,558,183 - AZOBR_RS07395 0.19 -0.3
Or see this region's nucleotide sequence