Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04590

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS04585 and AZOBR_RS04590 are separated by 905 nucleotidesAZOBR_RS04590 and AZOBR_RS04595 are separated by 104 nucleotidesAZOBR_RS04595 and AZOBR_RS04600 are separated by 12 nucleotides AZOBR_RS04585: AZOBR_RS04585 - exported protein of unknown function, at 961,848 to 962,249 _RS04585 AZOBR_RS04590: AZOBR_RS04590 - 3-hydroxyalkanoate synthetase, at 963,155 to 965,473 _RS04590 AZOBR_RS04595: AZOBR_RS04595 - hypothetical protein, at 965,578 to 965,997 _RS04595 AZOBR_RS04600: AZOBR_RS04600 - phosphate acetyltransferase, at 966,010 to 966,969 _RS04600 Position (kb) 963 964 965 966Strain fitness (log2 ratio) -2 -1 0 1 2 3at 962.427 kb on - strandat 962.427 kb on - strandat 962.458 kb on + strandat 962.475 kb on + strandat 962.475 kb on + strandat 962.939 kb on + strandat 962.940 kb on - strandat 963.236 kb on + strandat 963.237 kb on - strandat 963.361 kb on + strandat 963.395 kb on + strand, within AZOBR_RS04590at 963.396 kb on - strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.554 kb on + strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.555 kb on - strand, within AZOBR_RS04590at 963.932 kb on + strand, within AZOBR_RS04590at 963.933 kb on - strand, within AZOBR_RS04590at 963.933 kb on - strand, within AZOBR_RS04590at 963.945 kb on + strand, within AZOBR_RS04590at 963.947 kb on + strand, within AZOBR_RS04590at 964.214 kb on + strand, within AZOBR_RS04590at 964.214 kb on + strand, within AZOBR_RS04590at 964.214 kb on + strand, within AZOBR_RS04590at 964.214 kb on + strand, within AZOBR_RS04590at 964.215 kb on - strand, within AZOBR_RS04590at 964.215 kb on - strand, within AZOBR_RS04590at 964.259 kb on + strand, within AZOBR_RS04590at 964.259 kb on + strand, within AZOBR_RS04590at 964.260 kb on - strand, within AZOBR_RS04590at 964.379 kb on + strand, within AZOBR_RS04590at 964.442 kb on + strand, within AZOBR_RS04590at 964.443 kb on - strand, within AZOBR_RS04590at 964.443 kb on - strand, within AZOBR_RS04590at 964.443 kb on - strand, within AZOBR_RS04590at 964.443 kb on - strand, within AZOBR_RS04590at 964.562 kb on + strand, within AZOBR_RS04590at 964.563 kb on - strand, within AZOBR_RS04590at 964.563 kb on - strand, within AZOBR_RS04590at 964.652 kb on + strandat 964.653 kb on - strand, within AZOBR_RS04590at 964.653 kb on - strand, within AZOBR_RS04590at 964.655 kb on + strand, within AZOBR_RS04590at 964.655 kb on + strand, within AZOBR_RS04590at 964.655 kb on + strand, within AZOBR_RS04590at 964.656 kb on - strand, within AZOBR_RS04590at 964.656 kb on - strand, within AZOBR_RS04590at 964.853 kb on + strand, within AZOBR_RS04590at 964.854 kb on - strand, within AZOBR_RS04590at 964.854 kb on - strand, within AZOBR_RS04590at 964.854 kb on - strand, within AZOBR_RS04590at 965.807 kb on - strand, within AZOBR_RS04595at 965.872 kb on + strand, within AZOBR_RS04595at 965.887 kb on + strand, within AZOBR_RS04595at 965.923 kb on + strand, within AZOBR_RS04595at 965.923 kb on + strand, within AZOBR_RS04595at 965.923 kb on + strand, within AZOBR_RS04595at 965.923 kb on + strand, within AZOBR_RS04595at 965.950 kb on + strand, within AZOBR_RS04595at 965.951 kb on - strand, within AZOBR_RS04595at 965.983 kb on + strandat 965.984 kb on - strandat 965.984 kb on - strandat 965.984 kb on - strandat 966.052 kb on + strandat 966.053 kb on - strandat 966.053 kb on - strandat 966.437 kb on - strand, within AZOBR_RS04600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
962,427 - -0.1
962,427 - -0.7
962,458 + +0.3
962,475 + -1.9
962,475 + +0.2
962,939 + +0.5
962,940 - -2.5
963,236 + -2.3
963,237 - +2.5
963,361 + +0.1
963,395 + AZOBR_RS04590 0.10 -0.9
963,396 - AZOBR_RS04590 0.10 +1.0
963,554 + AZOBR_RS04590 0.17 +0.2
963,554 + AZOBR_RS04590 0.17 +0.7
963,554 + AZOBR_RS04590 0.17 +1.3
963,554 + AZOBR_RS04590 0.17 +3.3
963,554 + AZOBR_RS04590 0.17 -2.5
963,554 + AZOBR_RS04590 0.17 -0.6
963,555 - AZOBR_RS04590 0.17 +0.3
963,555 - AZOBR_RS04590 0.17 -0.0
963,555 - AZOBR_RS04590 0.17 +1.7
963,555 - AZOBR_RS04590 0.17 -1.8
963,555 - AZOBR_RS04590 0.17 +1.2
963,555 - AZOBR_RS04590 0.17 +0.3
963,555 - AZOBR_RS04590 0.17 +2.5
963,932 + AZOBR_RS04590 0.34 -0.2
963,933 - AZOBR_RS04590 0.34 -0.9
963,933 - AZOBR_RS04590 0.34 -0.3
963,945 + AZOBR_RS04590 0.34 -0.5
963,947 + AZOBR_RS04590 0.34 -0.2
964,214 + AZOBR_RS04590 0.46 +0.0
964,214 + AZOBR_RS04590 0.46 +0.5
964,214 + AZOBR_RS04590 0.46 -0.6
964,214 + AZOBR_RS04590 0.46 +0.2
964,215 - AZOBR_RS04590 0.46 +0.5
964,215 - AZOBR_RS04590 0.46 -0.8
964,259 + AZOBR_RS04590 0.48 +0.9
964,259 + AZOBR_RS04590 0.48 -0.9
964,260 - AZOBR_RS04590 0.48 -1.7
964,379 + AZOBR_RS04590 0.53 +2.9
964,442 + AZOBR_RS04590 0.55 +0.9
964,443 - AZOBR_RS04590 0.56 -1.6
964,443 - AZOBR_RS04590 0.56 +1.2
964,443 - AZOBR_RS04590 0.56 +1.4
964,443 - AZOBR_RS04590 0.56 -1.2
964,562 + AZOBR_RS04590 0.61 -1.4
964,563 - AZOBR_RS04590 0.61 -0.0
964,563 - AZOBR_RS04590 0.61 +0.8
964,652 + +2.5
964,653 - AZOBR_RS04590 0.65 -0.9
964,653 - AZOBR_RS04590 0.65 -2.7
964,655 + AZOBR_RS04590 0.65 -2.5
964,655 + AZOBR_RS04590 0.65 +0.9
964,655 + AZOBR_RS04590 0.65 -1.8
964,656 - AZOBR_RS04590 0.65 -1.1
964,656 - AZOBR_RS04590 0.65 +0.6
964,853 + AZOBR_RS04590 0.73 -0.5
964,854 - AZOBR_RS04590 0.73 +1.1
964,854 - AZOBR_RS04590 0.73 -0.1
964,854 - AZOBR_RS04590 0.73 -1.9
965,807 - AZOBR_RS04595 0.55 +0.3
965,872 + AZOBR_RS04595 0.70 -1.7
965,887 + AZOBR_RS04595 0.74 -0.1
965,923 + AZOBR_RS04595 0.82 -1.8
965,923 + AZOBR_RS04595 0.82 -1.8
965,923 + AZOBR_RS04595 0.82 +0.2
965,923 + AZOBR_RS04595 0.82 +0.0
965,950 + AZOBR_RS04595 0.89 -1.7
965,951 - AZOBR_RS04595 0.89 -1.5
965,983 + +0.9
965,984 - +0.8
965,984 - +2.3
965,984 - +2.5
966,052 + +0.6
966,053 - +0.1
966,053 - +1.8
966,437 - AZOBR_RS04600 0.44 -2.1

Or see this region's nucleotide sequence