Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03180 and AZOBR_RS03185 overlap by 4 nucleotides AZOBR_RS03185 and AZOBR_RS03190 are separated by 33 nucleotides AZOBR_RS03190 and AZOBR_RS03195 are separated by 73 nucleotides AZOBR_RS03195 and AZOBR_RS03200 are separated by 165 nucleotides
AZOBR_RS03180: AZOBR_RS03180 - hypothetical protein, at 678,481 to 678,876
_RS03180
AZOBR_RS03185: AZOBR_RS03185 - putative transcriptional regulator AbrB family, at 678,873 to 679,139
_RS03185
AZOBR_RS03190: AZOBR_RS03190 - aerobic cobaltochelatase subunit CobS, at 679,173 to 680,177
_RS03190
AZOBR_RS03195: AZOBR_RS03195 - molecular chaperone DnaJ, at 680,251 to 680,835
_RS03195
AZOBR_RS03200: AZOBR_RS03200 - BolA family transcriptional regulator, at 681,001 to 681,273
_RS03200
Position (kb) 679
680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 679.132 kb on + strand at 679.133 kb on - strand at 679.232 kb on - strand at 679.235 kb on - strand at 679.504 kb on + strand, within AZOBR_RS03190 at 679.504 kb on + strand, within AZOBR_RS03190 at 679.505 kb on - strand, within AZOBR_RS03190 at 679.505 kb on - strand, within AZOBR_RS03190 at 679.570 kb on + strand, within AZOBR_RS03190 at 680.184 kb on + strand at 680.188 kb on + strand at 680.188 kb on + strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.262 kb on - strand at 680.282 kb on + strand at 680.282 kb on + strand at 680.283 kb on - strand at 680.646 kb on - strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.666 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.799 kb on - strand at 680.813 kb on + strand at 680.844 kb on + strand at 680.845 kb on - strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 678,677 - AZOBR_RS03180 0.49 +0.3 678,677 - AZOBR_RS03180 0.49 -0.4 678,677 - AZOBR_RS03180 0.49 -0.7 678,677 - AZOBR_RS03180 0.49 -0.8 678,677 - AZOBR_RS03180 0.49 +0.7 678,677 - AZOBR_RS03180 0.49 -2.1 679,132 + -0.0 679,133 - +1.2 679,232 - +0.2 679,235 - +0.7 679,504 + AZOBR_RS03190 0.33 -1.5 679,504 + AZOBR_RS03190 0.33 -1.2 679,505 - AZOBR_RS03190 0.33 -1.5 679,505 - AZOBR_RS03190 0.33 -2.0 679,570 + AZOBR_RS03190 0.40 -1.3 680,184 + -1.3 680,188 + -1.7 680,188 + -0.3 680,189 - -1.2 680,189 - +0.2 680,189 - +0.2 680,189 - +0.3 680,261 + -0.1 680,261 + +0.9 680,261 + -2.4 680,262 - -2.6 680,282 + -0.9 680,282 + -1.5 680,283 - -3.1 680,646 - AZOBR_RS03195 0.68 -0.4 680,648 + AZOBR_RS03195 0.68 -0.3 680,648 + AZOBR_RS03195 0.68 -1.2 680,649 - AZOBR_RS03195 0.68 -0.6 680,649 - AZOBR_RS03195 0.68 -0.6 680,666 + AZOBR_RS03195 0.71 -0.5 680,696 + AZOBR_RS03195 0.76 -0.4 680,696 + AZOBR_RS03195 0.76 -0.3 680,697 - AZOBR_RS03195 0.76 -2.6 680,697 - AZOBR_RS03195 0.76 +0.7 680,699 + AZOBR_RS03195 0.77 -0.4 680,699 + AZOBR_RS03195 0.77 -0.4 680,699 + AZOBR_RS03195 0.77 -1.6 680,799 - +0.7 680,813 + +0.3 680,844 + +0.5 680,845 - -0.5 681,007 + -0.9 681,007 + +0.0 681,007 + +0.4 681,008 - +1.6 681,008 - -1.7 681,008 - -0.1 681,008 - -0.1
Or see this region's nucleotide sequence